View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2640_high_2 (Length: 920)
Name: NF2640_high_2
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2640_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 7 - 491
Target Start/End: Original strand, 31862530 - 31863006
Alignment:
| Q |
7 |
tcgaagaatatacaaggttggagtttccctttcacagatattttatatgaaaagtataaattgttgtctatgtgatacaggttaagtaaaatagtagcac |
106 |
Q |
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| T |
31862530 |
tcgaagaaaatacaaggttggagtttccctttcacagatattttatatgaaaagtataaattgttgtctatgtgatacaggttaagtaaaatagtagcac |
31862629 |
T |
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| Q |
107 |
tgttgaggcaagagccaagagataacattagttactacatcatcatcttccactacactacataagctaaatgctaggccaagtgattctaaaagtttaa |
206 |
Q |
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| T |
31862630 |
tgttgaggcaagagccaagagataacattagttactacatcatcatcttccactacactacataagctaaatgctaggccaagtgattctaaaagtttaa |
31862729 |
T |
|
| Q |
207 |
actagtacttctttagtctatttatatatactatcttatttctttggaacctacctacgtttacgattcatcatttgaagcgtgatctgaatgatttgac |
306 |
Q |
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| T |
31862730 |
actagtacttctttagtctatttatatatactatcttatttctttggaacctacccacgtttacgattcatcatttgaagcgtgatctgaatgattcgac |
31862829 |
T |
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| Q |
307 |
aactatgatctaatagatattgaataactacgatatcattttaaaatttagattaagttttactaaagagacgcgaagatagggacgaagagagttgcgt |
406 |
Q |
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| T |
31862830 |
aactatgatctaatagatattgaataactacgatattattttaaaatttagattaagttttactaaagagacgcgaagatagggacgaagagagcagcgt |
31862929 |
T |
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| Q |
407 |
tagctcatttttctcgtcccttactccttttatgcgtctatcagtctatcagccatactcaacaaaatctcattagtttgataat |
491 |
Q |
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| T |
31862930 |
tagttcatttttctcgtcccttactcctcttatgc--------gtctatcagccatactcaacaaaatcttattagtttgataat |
31863006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 537 - 920
Target Start/End: Original strand, 31863049 - 31863431
Alignment:
| Q |
537 |
gcagtgctcaatagtttaattcaatgaaatagtttagaaattaatagtattaaagattaatccaacaattgagattgagttgaaccacataaaaataatc |
636 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31863049 |
gcagtgctcaatagtttaattcaatgaaatagtttagaaattaa-actattaaagattaatccaacaattgagattgagttgaaccacataaaaataatc |
31863147 |
T |
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| Q |
637 |
atgtccgtacactctaagttagccacctcattcttgttcttttgctctttatttcctctcctataaaagtccaattaagttcgttaaatttattaaatgg |
736 |
Q |
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| T |
31863148 |
atgtccgtacactctaagttagccacctcattcttgttcttttgctctttatttcctctcctataaaagtccaattaagttcgttaaatttattaaatgg |
31863247 |
T |
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| Q |
737 |
aaaaataaaaatgtctccatgaattgacagaaagataaggccaaaattgattttcattttgactaatcaaaggtaattgcttatcactcaccaatcacca |
836 |
Q |
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| T |
31863248 |
aaaaataaaaatgtctccatgaattgacagaaagataaggccaaaattgattttcattttgactaatcaaaggtaattgcttatcactcaccaatcacca |
31863347 |
T |
|
| Q |
837 |
tcaagataagaagaaggtcactcattattatcaatgcatagtgcaacaaacagtaacattggatagagataataaaaacctcat |
920 |
Q |
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| T |
31863348 |
tcaagataagaagaaggtcactcattattatcaatgcatagtgcaacaaacagtaacattggatagagataataaaaacctcat |
31863431 |
T |
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