View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2640_high_23 (Length: 424)
Name: NF2640_high_23
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2640_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 565967 - 565559
Alignment:
| Q |
1 |
tgccaggttttgcatgataaatgcttaattaagtttttgtattttgcaagtagttgggtgttatatgtagtcttgaatgatattacttgggtaggattct |
100 |
Q |
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| T |
565967 |
tgccaggttttgcatgataaatgcttaattaagtttttgtattttgcaagtagttgggtgttatatgtagtcttgaatgatattacttggataggattct |
565868 |
T |
|
| Q |
101 |
tgtgtaatacttattgaagttcctattgtcagcatgagtttcacatacttgttataacaca-ttttatgtgttgtactttttgaatatataaactcaatc |
199 |
Q |
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| T |
565867 |
tgtgtaatacttattgaagttcctattgtcagcatgagttttccatacttgttacaacacagttttatgtgttgtactttttgaatatataaactcaatc |
565768 |
T |
|
| Q |
200 |
aaatctcaataaaacatcttcgattatctgcttaagtannnnnnncctcagaagattaaatctataaaatctattatgattaaatctacttacttttata |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
565767 |
aaatctcaataaaacatcttcgattatctgcttaagtatttttttcctcagaagattaaatctataaaatctattatgattaaatctacttacttttata |
565668 |
T |
|
| Q |
300 |
aggcttggattttttgttgttgttgttgtaatgatggtatagtcgggaatcataagaacaatacaagatatctaaaactagacaaacgatgacaatgtga |
399 |
Q |
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| T |
565667 |
aggcttggattttttgttgttgttgttgtaatgatggtatagtcgggaatcataagaacaatacaagatatctaaaactagacaaacgatgacaatgtga |
565568 |
T |
|
| Q |
400 |
gctccttca |
408 |
Q |
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| T |
565567 |
gctccttca |
565559 |
T |
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