View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2640_high_24 (Length: 378)
Name: NF2640_high_24
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2640_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 151 - 315
Target Start/End: Original strand, 30747417 - 30747581
Alignment:
| Q |
151 |
cttggttctttatttgtgtttctatgataggtcttnnnnnnnttgcttgaaaaaatgaattcaatcgtgcaaatgtcattgatctttgaaccctccatcg |
250 |
Q |
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| T |
30747417 |
cttggttctttatgtgtgtttctatgataggtctttaaaaaattgcttgaaaaaatgaattcaatcttgcaaatgtcatttatctttgaaccctccatcg |
30747516 |
T |
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| Q |
251 |
taggttcacatcaattggtatgagagtttcaatcaaataataatttattacacctaacaaatttt |
315 |
Q |
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| T |
30747517 |
taggttcacatcaattggtatgagagtttcaatcaaataataatttattacacctaacaaatttt |
30747581 |
T |
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Target: chr7; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 30747297 - 30747391
Alignment:
| Q |
18 |
ttatcaaggagattttcaaatctcttgtggcggttctcattttggtcttatcttcctcataaaagtggagatcatacatctatgtcttcatctagtctaa |
117 |
Q |
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| T |
30747297 |
ttatcaaggagattttcaaatctcttgtggcggttctcattttggtcttatcttc---------gtagagatcatacatctatgtcgtcatctagtctaa |
30747387 |
T |
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