View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2640_high_30 (Length: 296)

Name: NF2640_high_30
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2640_high_30
NF2640_high_30
[»] chr3 (9 HSPs)
chr3 (28-296)||(30825145-30825411)
chr3 (184-293)||(36672727-36672836)
chr3 (171-277)||(41850757-41850863)
chr3 (171-275)||(20647705-20647809)
chr3 (171-275)||(34422576-34422680)
chr3 (178-275)||(33069344-33069441)
chr3 (178-275)||(40488955-40489052)
chr3 (183-275)||(46116541-46116633)
chr3 (179-275)||(55008211-55008307)
[»] chr7 (6 HSPs)
chr7 (208-296)||(31249286-31249374)
chr7 (171-275)||(11410633-11410737)
chr7 (171-293)||(35516393-35516520)
chr7 (172-275)||(41892236-41892339)
chr7 (202-275)||(32670255-32670328)
chr7 (183-275)||(4067978-4068070)
[»] chr1 (10 HSPs)
chr1 (171-275)||(13253355-13253459)
chr1 (176-275)||(3831587-3831686)
chr1 (243-276)||(37638966-37638999)
chr1 (183-275)||(6889417-6889509)
chr1 (183-275)||(6891263-6891355)
chr1 (171-275)||(31493350-31493454)
chr1 (183-275)||(32239219-32239311)
chr1 (171-275)||(39860370-39860474)
chr1 (171-231)||(44969139-44969199)
chr1 (171-275)||(50096950-50097054)
[»] chr2 (4 HSPs)
chr2 (171-275)||(18075689-18075793)
chr2 (171-275)||(34726233-34726337)
chr2 (171-275)||(38213508-38213612)
chr2 (171-239)||(6283475-6283543)
[»] chr8 (4 HSPs)
chr8 (182-275)||(35737025-35737118)
chr8 (171-275)||(11989141-11989245)
chr8 (178-275)||(12939282-12939379)
chr8 (171-275)||(36684784-36684888)
[»] chr5 (5 HSPs)
chr5 (183-275)||(4049349-4049441)
chr5 (171-221)||(6644119-6644169)
chr5 (183-275)||(4101303-4101395)
chr5 (179-239)||(14949468-14949528)
chr5 (183-275)||(31271341-31271433)
[»] chr4 (10 HSPs)
chr4 (171-275)||(10010776-10010880)
chr4 (171-275)||(10017917-10018021)
chr4 (171-275)||(38307981-38308085)
chr4 (177-275)||(7363444-7363542)
chr4 (202-275)||(23106291-23106364)
chr4 (178-275)||(41487563-41487660)
chr4 (171-275)||(16711855-16711959)
chr4 (209-293)||(24390796-24390880)
chr4 (235-275)||(44523403-44523443)
chr4 (171-275)||(47691690-47691794)
[»] chr6 (5 HSPs)
chr6 (205-275)||(23645947-23646017)
chr6 (178-275)||(3027192-3027289)
chr6 (171-275)||(4111292-4111396)
chr6 (171-275)||(5153428-5153532)
chr6 (183-275)||(27613399-27613491)
[»] scaffold0259 (1 HSPs)
scaffold0259 (171-275)||(24889-24993)
[»] scaffold0037 (1 HSPs)
scaffold0037 (171-275)||(81248-81352)


Alignment Details
Target: chr3 (Bit Score: 156; Significance: 7e-83; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 28 - 296
Target Start/End: Complemental strand, 30825411 - 30825145
Alignment:
Q  28 gagaagttagagaatccagaagtaagggacaaatggtgataataagtgagaccaggctatactttgattggcttgagcctcgtctacgaannnnnnngtg 127  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||| |||       |||    
T  30825411 gagaagttagagaatccagaactaagggacaaatgatgataataagtgagaccaggctatgctttgataggcttgagcctcgtctatgaaattttttgtg 30825312  T
Q  128 aatctgaacatggcctatggtctttcgtatgcttannnnnnnnggcctagcctgacctattcaaaagtctgacttgacctgaaagcttatttacatgctt 227  Q
    ||||| ||| |||||||||| |||||||||||||         |||||||||| || |||||||||||||||||||||||||||| ||||||||||||||    
T  30825311 aatctaaacctggcctatggactttcgtatgctt-ttttttttggcctagcctaacttattcaaaagtctgacttgacctgaaagtttatttacatgctt 30825213  T
Q  228 actttaaattaaaggtattaaatagtctattttatctacttttaaataagtctaattgaccttaaaacc 296  Q
    ||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  30825212 actttaaattaaa-gtattaaatagtttattttatttacttttaaataagtctaattgaccttaaaacc 30825145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 184 - 293
Target Start/End: Complemental strand, 36672836 - 36672727
Alignment:
Q  184 ctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctacttttaaataagtctaat 283  Q
    ||||| |||||| || | |||||||||||| ||||||||||| ||||||||||||| |  |||||||| || ||||| ||||||| |||||| ||| |||    
T  36672836 ctatttaaaagtttggcctgacctgaaagcatatttacatgcctactttaaattaacgtaattaaatattcaattttgtctacttctaaataggtcaaat 36672737  T
Q  284 tgaccttaaa 293  Q
    || |||||||    
T  36672736 tggccttaaa 36672727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 277
Target Start/End: Original strand, 41850757 - 41850863
Alignment:
Q  171 ggcctagcctgacctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctactttt 270  Q
    |||||||  ||||||||| || ||||| |  |||| ||||||| ||||||||||| | ||| | ||||||   ||||||||||| |||||||||||||||    
T  41850757 ggcctagtttgacctatttaatagtctaatatgacatgaaagcatatttacatgcatccttcatattaaaataattaaatagtcaattttatctactttt 41850856  T
Q  271 aaataag 277  Q
    |||||||    
T  41850857 aaataag 41850863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 275
Target Start/End: Complemental strand, 20647809 - 20647705
Alignment:
Q  171 ggcctagcctgacctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctactttt 270  Q
    ||||| |||||||||||| ||||||||| | || ||||||||  |||||||| || |||||   |||||||  |||||| | || |||||||||||||||    
T  20647809 ggcctggcctgacctatttaaaagtctggcctggcctgaaagtctatttacaggcctacttactattaaagtcattaaacattccattttatctactttt 20647710  T
Q  271 aaata 275  Q
    |||||    
T  20647709 aaata 20647705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 275
Target Start/End: Complemental strand, 34422680 - 34422576
Alignment:
Q  171 ggcctagcctgacctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctactttt 270  Q
    ||||| ||||| |||||| ||||||||| | || ||||||||| |||||||| || |||||   |||||||  |||||| | || |||||||||||||||    
T  34422680 ggcctggcctggcctatttaaaagtctggcctggcctgaaagcctatttacaggcctacttactattaaagtcattaaacattccattttatctactttt 34422581  T
Q  271 aaata 275  Q
    |||||    
T  34422580 aaata 34422576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 275
Target Start/End: Complemental strand, 33069441 - 33069344
Alignment:
Q  178 cctgacctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctacttttaaata 275  Q
    ||||||||||| ||||||||| | || ||||||||| |||||||| || | |||   |||||||  | |||| | || ||||||||||||||||||||    
T  33069441 cctgacctatttaaaagtctggcctggcctgaaagcctatttacaggcctccttactattaaagtcactaaacattccattttatctacttttaaata 33069344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 275
Target Start/End: Complemental strand, 40489052 - 40488955
Alignment:
Q  178 cctgacctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctacttttaaata 275  Q
    |||| |||||| ||||||||| | || ||||||||| |||||||| || |||||   |||||||  | |||| | || ||||||||||||||||||||    
T  40489052 cctggcctatttaaaagtctggcctggcctgaaagcctatttacaggcctacttactattaaagtcactaaacattccattttatctacttttaaata 40488955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 275
Target Start/End: Original strand, 46116541 - 46116633
Alignment:
Q  183 cctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctacttttaaata 275  Q
    |||||| ||||| ||||| |||||||||||| ||||||||| | |||||   |||||||  |||||| | |  ||||||||||||| ||||||    
T  46116541 cctatttaaaaggctgacctgacctgaaagcctatttacatacctacttattattaaagtcattaaacatttcattttatctacttctaaata 46116633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 275
Target Start/End: Original strand, 55008211 - 55008307
Alignment:
Q  179 ctgacctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctacttttaaata 275  Q
    |||||||||| |||||| ||   || ||||||||| |||||||| || |||||   |||||||  | |||| | |||||||||||||||||||||||    
T  55008211 ctgacctatttaaaagtttggtctggcctgaaagcctatttacaggcctacttactattaaagtcactaaacattctattttatctacttttaaata 55008307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 208 - 296
Target Start/End: Complemental strand, 31249374 - 31249286
Alignment:
Q  208 gaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctacttttaaataagtctaattgaccttaaaacc 296  Q
    ||||||||||  |||||| |||||||||||||||  ||||||||||  ||||||| |||||||||||||||| | ||| ||||||||||    
T  31249374 gaaagcttatccacatgcctactttaaattaaagtcattaaatagttcattttatatacttttaaataagtcaatttggccttaaaacc 31249286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 275
Target Start/End: Original strand, 11410633 - 11410737
Alignment:
Q  171 ggcctagcctgacctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctactttt 270  Q
    ||||| |||||||||||| ||||||||| | || ||||||||| |||||||| || |||||   |||||||  | |||| | || |||||||||||||||    
T  11410633 ggcctggcctgacctatttaaaagtctggcctggcctgaaagcctatttacaggcctacttactattaaagtcactaaacattccattttatctactttt 11410732  T
Q  271 aaata 275  Q
    |||||    
T  11410733 aaata 11410737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 293
Target Start/End: Complemental strand, 35516520 - 35516393
Alignment:
Q  171 ggcctagcctgacctattcaaaag-----tctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatcta 265  Q
    |||||||||||||||||| |||||     |||| | || ||||||||| |||||||| || ||||||| |||||||  |||||||| || ||||| | ||    
T  35516520 ggcctagcctgacctatttaaaagcctggtctggcctggcctgaaagcctatttacaggcctactttatattaaagtcattaaatattcaattttgtata 35516421  T
Q  266 cttttaaataagtctaattgaccttaaa 293  Q
    ||| |||||| | | |||||||||||||    
T  35516420 cttctaaatatgccaaattgaccttaaa 35516393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 275
Target Start/End: Original strand, 41892236 - 41892339
Alignment:
Q  172 gcctagcctgacctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctactttta 271  Q
    |||| ||||| |||||| ||||||||| | || ||||||||| ||||| || || |||||   |||||||  | |||| | |||||||||||||||||||    
T  41892236 gcctggcctggcctatttaaaagtctggcctggcctgaaagcctatttgcaggcctacttactattaaagtcactaaacattctattttatctactttta 41892335  T
Q  272 aata 275  Q
    ||||    
T  41892336 aata 41892339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 275
Target Start/End: Complemental strand, 32670328 - 32670255
Alignment:
Q  202 tgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctacttttaaata 275  Q
    |||||||||||| |||||||| || ||||| | |||||||  | |||| | | |||||||||||||||||||||    
T  32670328 tgacctgaaagcctatttacaggcatacttaatattaaagtcactaaacattttattttatctacttttaaata 32670255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 275
Target Start/End: Original strand, 4067978 - 4068070
Alignment:
Q  183 cctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctacttttaaata 275  Q
    |||||| ||||||||| | |||||||||||| ||||||||  | |||||   |||||||  | |||| | || ||||||||||||||||||||    
T  4067978 cctatttaaaagtctggcctgacctgaaagcctatttacaaacatacttactattaaagtcactaaacattccattttatctacttttaaata 4068070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 275
Target Start/End: Original strand, 13253355 - 13253459
Alignment:
Q  171 ggcctagcctgacctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctactttt 270  Q
    ||||| ||||| |||||| ||||||||||| |||||||||||| |||||||| || |||||   |||||||  | |||| | || |||||||||||||||    
T  13253355 ggcctggcctggcctatttaaaagtctgacatgacctgaaagcctatttacaggcctacttactattaaagtcactaaacattccattttatctactttt 13253454  T
Q  271 aaata 275  Q
    |||||    
T  13253455 aaata 13253459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 275
Target Start/End: Original strand, 3831587 - 3831686
Alignment:
Q  176 agcctgacctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctacttttaaata 275  Q
    |||||| |||||| ||||||||||| || ||||||||| |||||||| || |||||   |||||||  | |||| | || ||||||||||||||||||||    
T  3831587 agcctggcctatttaaaagtctgacctggcctgaaagcctatttacaggcctacttactattaaagtcactaaacattccattttatctacttttaaata 3831686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 276
Target Start/End: Original strand, 37638966 - 37638999
Alignment:
Q  243 tattaaatagtctattttatctacttttaaataa 276  Q
    ||||||||||||||||||||||||||||||||||    
T  37638966 tattaaatagtctattttatctacttttaaataa 37638999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 275
Target Start/End: Complemental strand, 6889509 - 6889417
Alignment:
Q  183 cctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctacttttaaata 275  Q
    |||||| ||||||||| | |||||||||||| |||||||| || |||||   |||||||  | |||| | || ||||||||||||||||||||    
T  6889509 cctatttaaaagtctggcctgacctgaaagcctatttacaggcctacttactattaaagtcactaaacattccattttatctacttttaaata 6889417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 275
Target Start/End: Complemental strand, 6891355 - 6891263
Alignment:
Q  183 cctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctacttttaaata 275  Q
    |||||| ||||||||| | |||||||||||| |||||||| || |||||   |||||||  | |||| | || ||||||||||||||||||||    
T  6891355 cctatttaaaagtctggcctgacctgaaagcctatttacaggcctacttactattaaagtcactaaacattccattttatctacttttaaata 6891263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 275
Target Start/End: Complemental strand, 31493454 - 31493350
Alignment:
Q  171 ggcctagcctgacctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctactttt 270  Q
    |||||||||||||||||| |||||||||   || || ||||||||||||||| || || ||   |||||||  | |||| | || |||||||||||||||    
T  31493454 ggcctagcctgacctatttaaaagtctggtctggcccgaaagcttatttacaggcctatttactattaaagtcactaaacattccattttatctactttt 31493355  T
Q  271 aaata 275  Q
    |||||    
T  31493354 aaata 31493350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 275
Target Start/End: Complemental strand, 32239311 - 32239219
Alignment:
Q  183 cctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctacttttaaata 275  Q
    |||||| ||||||||| |||| ||||||||  |||||||| || |||||   |||||||  | |||| | || ||||||||||||||||||||    
T  32239311 cctatttaaaagtctggcttggcctgaaagactatttacaggcctacttactattaaagtcactaaacattccattttatctacttttaaata 32239219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 275
Target Start/End: Complemental strand, 39860474 - 39860370
Alignment:
Q  171 ggcctagcctgacctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctactttt 270  Q
    ||||| ||||| |||||| ||||| ||| | || ||||||||| |||||||| || |||||   |||||||  | |||| | || |||||||||||||||    
T  39860474 ggcctggcctggcctatttaaaagcctggcctggcctgaaagcctatttacaggcctacttactattaaagtcactaaacattccattttatctactttt 39860375  T
Q  271 aaata 275  Q
    |||||    
T  39860374 aaata 39860370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 44969139 - 44969199
Alignment:
Q  171 ggcctagcctgacctattcaaaagtctgacttgacctgaaagcttatttacatgcttactt 231  Q
    ||||| |||||||||||| ||||||||| | || ||||||||| |||||||| || |||||    
T  44969139 ggcctggcctgacctatttaaaagtctggcctggcctgaaagcctatttacaggcctactt 44969199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 275
Target Start/End: Complemental strand, 50097054 - 50096950
Alignment:
Q  171 ggcctagcctgacctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctactttt 270  Q
    ||||| ||||| |||||| |||||| || |||| ||||||||| |||||||| |  |||||   |||||||  | |||| | || |||||||||||||||    
T  50097054 ggcctggcctggcctatttaaaagtatggcttggcctgaaagcctatttacaagtctacttactattaaagtaactaaacattccattttatctactttt 50096955  T
Q  271 aaata 275  Q
    |||||    
T  50096954 aaata 50096950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 275
Target Start/End: Complemental strand, 18075793 - 18075689
Alignment:
Q  171 ggcctagcctgacctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctactttt 270  Q
    ||||| |||||||||||| ||||||||| | || ||||||||| |||||||| || |||||   |||||||  | |||| | || |||||||||||||||    
T  18075793 ggcctggcctgacctatttaaaagtctggcctggcctgaaagcctatttacaggcctacttactattaaagtcactaaacattccattttatctactttt 18075694  T
Q  271 aaata 275  Q
    |||||    
T  18075693 aaata 18075689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 275
Target Start/End: Complemental strand, 34726337 - 34726233
Alignment:
Q  171 ggcctagcctgacctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctactttt 270  Q
    ||||| |||||||||||| ||||| ||| | |||||||||||| |||||||| || |||||   |||||||  | |||| | || |||||||||||||||    
T  34726337 ggcctggcctgacctatttaaaagcctggcctgacctgaaagcctatttacaggcctacttactattaaagtcactaaacattccattttatctactttt 34726238  T
Q  271 aaata 275  Q
    |||||    
T  34726237 aaata 34726233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 275
Target Start/End: Original strand, 38213508 - 38213612
Alignment:
Q  171 ggcctagcctgacctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctactttt 270  Q
    ||||| |||||||||||| ||||||||| | |||||||||||| |||||||| |  |||||   |||||||  | |||| | || |||||||||||||||    
T  38213508 ggcctggcctgacctatttaaaagtctggcctgacctgaaagcctatttacaggtctacttactattaaagtcactaaacattccattttatctactttt 38213607  T
Q  271 aaata 275  Q
    |||||    
T  38213608 aaata 38213612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 6283475 - 6283543
Alignment:
Q  171 ggcctagcctgacctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaa 239  Q
    ||||| |||||||||||| |||||||||   |||||||||||| || ||||| || ||||||| |||||    
T  6283475 ggcctggcctgacctatttaaaagtctggactgacctgaaagcctacttacaggcctactttatattaa 6283543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 275
Target Start/End: Complemental strand, 35737118 - 35737025
Alignment:
Q  182 acctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctacttttaaata 275  Q
    ||||||| ||||||||||| |||||| ||||  |||||| |||  || |||| |||||||  ||||||||||  |||||||||| |||||||||    
T  35737118 acctatttaaaagtctgacctgacctaaaagtctatttatatgtctattttatattaaagtcattaaatagttcattttatctatttttaaata 35737025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 275
Target Start/End: Original strand, 11989141 - 11989245
Alignment:
Q  171 ggcctagcctgacctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctactttt 270  Q
    ||||| |||||||||||| |||| |||| | || ||||||||| |||||||| || |||||   |||||||  | |||| | || |||||||||||||||    
T  11989141 ggcctggcctgacctatttaaaattctggcctggcctgaaagcctatttacaggcctacttaccattaaagtcactaaacattccattttatctactttt 11989240  T
Q  271 aaata 275  Q
    |||||    
T  11989241 aaata 11989245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 275
Target Start/End: Original strand, 12939282 - 12939379
Alignment:
Q  178 cctgacctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctacttttaaata 275  Q
    ||||| ||||| ||||||||||| |||||||||| | ||| ||||  | ||||| | |||||||  |||||||| |  ||||||||||||| ||||||    
T  12939282 cctgatctatttaaaagtctgacatgacctgaaaacctatatacaaacctacttcacattaaagtcattaaataattcattttatctacttctaaata 12939379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 275
Target Start/End: Original strand, 36684784 - 36684888
Alignment:
Q  171 ggcctagcctgacctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctactttt 270  Q
    ||||| ||||| |||||| ||||| ||| | || ||||||||| |||||||| || |||||   |||||||  | |||| | || |||||||||||||||    
T  36684784 ggcctggcctggcctatttaaaagcctggcctggcctgaaagcctatttacaggcctacttactattaaagtcactaaacattccattttatctactttt 36684883  T
Q  271 aaata 275  Q
    |||||    
T  36684884 aaata 36684888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 275
Target Start/End: Complemental strand, 4049441 - 4049349
Alignment:
Q  183 cctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctacttttaaata 275  Q
    |||||| ||||||||| | || ||||||||| |||||||| || |||||   |||||||  |||||| | || ||||||||||||||||||||    
T  4049441 cctatttaaaagtctggcctggcctgaaagcctatttacaggcctacttactattaaagtcattaaacattccattttatctacttttaaata 4049349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 6644169 - 6644119
Alignment:
Q  171 ggcctagcctgacctattcaaaagtctgacttgacctgaaagcttatttac 221  Q
    ||||| |||||||||||| ||||| ||||| |||||||||||| |||||||    
T  6644169 ggcctggcctgacctatttaaaagcctgacctgacctgaaagcctatttac 6644119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 275
Target Start/End: Original strand, 4101303 - 4101395
Alignment:
Q  183 cctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctacttttaaata 275  Q
    |||||| ||||| ||| | || ||||||||| |||||||| || |||||   ||||||| || |||| | || ||||||||||||||||||||    
T  4101303 cctatttaaaagcctggcctggcctgaaagcctatttacaagcctacttactattaaagttactaaacattccattttatctacttttaaata 4101395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 14949528 - 14949468
Alignment:
Q  179 ctgacctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaa 239  Q
    |||||||||| |||||||||   |||||||||||| || |||||||| ||||||| |||||    
T  14949528 ctgacctatttaaaagtctggactgacctgaaagcctacttacatgcctactttatattaa 14949468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 275
Target Start/End: Complemental strand, 31271433 - 31271341
Alignment:
Q  183 cctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctacttttaaata 275  Q
    |||||| ||||||||| | || ||||||||| |||||||| || |||||   |||||||  | |||| | || ||||||||||||||||||||    
T  31271433 cctatttaaaagtctggcctggcctgaaagcctatttacaggcctacttactattaaagtcactaaacattccattttatctacttttaaata 31271341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 275
Target Start/End: Complemental strand, 10010880 - 10010776
Alignment:
Q  171 ggcctagcctgacctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctactttt 270  Q
    ||||| |||||||||||| ||||| ||| | || ||||||||| |||||||| || |||||   |||||||  | |||| | || |||||||||||||||    
T  10010880 ggcctggcctgacctatttaaaagcctggcctggcctgaaagcctatttacaggcctacttactattaaagtcactaaacattccattttatctactttt 10010781  T
Q  271 aaata 275  Q
    |||||    
T  10010780 aaata 10010776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 275
Target Start/End: Complemental strand, 10018021 - 10017917
Alignment:
Q  171 ggcctagcctgacctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctactttt 270  Q
    ||||| |||||||||||| ||||| ||| | || ||||||||| |||||||| || |||||   |||||||  | |||| | || |||||||||||||||    
T  10018021 ggcctggcctgacctatttaaaagcctggcctggcctgaaagcctatttacaggcctacttactattaaagtcactaaacattccattttatctactttt 10017922  T
Q  271 aaata 275  Q
    |||||    
T  10017921 aaata 10017917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 275
Target Start/End: Complemental strand, 38308085 - 38307981
Alignment:
Q  171 ggcctagcctgacctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctactttt 270  Q
    ||||| ||||| |||||| ||||||||| | || ||||||||| |||||||| || |||||   |||||||  | |||| | || |||||||||||||||    
T  38308085 ggcctggcctggcctatttaaaagtctggcctggcctgaaagcctatttacaggcctacttactattaaagtcactaaacattccattttatctactttt 38307986  T
Q  271 aaata 275  Q
    |||||    
T  38307985 aaata 38307981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 275
Target Start/End: Complemental strand, 7363542 - 7363444
Alignment:
Q  177 gcctgacctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctacttttaaata 275  Q
    ||||| |||| | ||||||||| | |||||||||||| |||||||| || |||||   |||||||  | |||| | || ||||||||||||||||||||    
T  7363542 gcctggcctacttaaaagtctggcctgacctgaaagcctatttacaggcctacttactattaaagtcactaaacattccattttatctacttttaaata 7363444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 275
Target Start/End: Complemental strand, 23106364 - 23106291
Alignment:
Q  202 tgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctacttttaaata 275  Q
    |||||||||||| |||||||| ||||||||   |||||||  | |||| | || ||||||||||||||||||||    
T  23106364 tgacctgaaagcctatttacaagcttacttactattaaagtcactaaacattccattttatctacttttaaata 23106291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 275
Target Start/End: Original strand, 41487563 - 41487660
Alignment:
Q  178 cctgacctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctacttttaaata 275  Q
    ||||||||||| ||||||||  | || ||||||||| |||||||| || |||||   |||||||  |||||| | |  ||||||||||||||||||||    
T  41487563 cctgacctatttaaaagtctagcctggcctgaaagcctatttacaggcctacttactattaaagtcattaaacatttcattttatctacttttaaata 41487660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 275
Target Start/End: Original strand, 16711855 - 16711959
Alignment:
Q  171 ggcctagcctgacctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctactttt 270  Q
    ||||| ||||| |||||| ||||||||| | |||||||||| | |||||||| || |||||   |||||||  | |||| | || ||||||| |||||||    
T  16711855 ggcctggcctggcctatttaaaagtctggcctgacctgaaaacctatttacaggcctacttactattaaagtcactaaacattccattttatatactttt 16711954  T
Q  271 aaata 275  Q
    |||||    
T  16711955 aaata 16711959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 293
Target Start/End: Complemental strand, 24390880 - 24390796
Alignment:
Q  209 aaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctacttttaaataagtctaattgaccttaaa 293  Q
    ||||| ||||||||||| |||| || |||||||  |||||||| |  ||||| |||||||||||||| ||  ||||| |||||||    
T  24390880 aaagcctatttacatgcctactatatattaaagtcattaaatatttaattttgtctacttttaaataggttaaattggccttaaa 24390796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 44523443 - 44523403
Alignment:
Q  235 attaaaggtattaaatagtctattttatctacttttaaata 275  Q
    ||||||| |||||||||||  ||||||||||||||||||||    
T  44523443 attaaagttattaaatagttcattttatctacttttaaata 44523403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 275
Target Start/End: Original strand, 47691690 - 47691794
Alignment:
Q  171 ggcctagcctgacctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctactttt 270  Q
    ||||| ||||| |||||| ||||| ||| | || ||||||||| |||||||| || |||||   |||||||  | |||| | || |||||||||||||||    
T  47691690 ggcctggcctggcctatttaaaagcctggcctggcctgaaagcctatttacaggcctacttactattaaagtcactaaacattccattttatctactttt 47691789  T
Q  271 aaata 275  Q
    |||||    
T  47691790 aaata 47691794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 23645947 - 23646017
Alignment:
Q  205 cctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctacttttaaata 275  Q
    ||||||||| |||||||| ||||||||   |||||||  |||||| | || ||||||||||||||||||||    
T  23645947 cctgaaagcgtatttacaggcttacttactattaaagtcattaaacattccattttatctacttttaaata 23646017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 275
Target Start/End: Complemental strand, 3027289 - 3027192
Alignment:
Q  178 cctgacctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctacttttaaata 275  Q
    ||||||||||| ||||| ||| | || ||||||||| |||||||| || |||||   |||||||  | |||| | || ||||||||||||||||||||    
T  3027289 cctgacctatttaaaagcctggcctggcctgaaagcctatttacaggcctacttactattaaagtcactaaacattccattttatctacttttaaata 3027192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 275
Target Start/End: Complemental strand, 4111396 - 4111292
Alignment:
Q  171 ggcctagcctgacctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctactttt 270  Q
    ||||| ||||| |||||| ||||| ||| | || ||||||||| |||||||| || |||||   |||||||  | |||| | || |||||||||||||||    
T  4111396 ggcctggcctggcctatttaaaagcctggcctggcctgaaagcctatttacaggcctacttactattaaagtcactaaacattccattttatctactttt 4111297  T
Q  271 aaata 275  Q
    |||||    
T  4111296 aaata 4111292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 275
Target Start/End: Original strand, 5153428 - 5153532
Alignment:
Q  171 ggcctagcctgacctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctactttt 270  Q
    ||||| ||||| |||||| ||||| ||| | || ||||||||| |||||||| || |||||   |||||||  | |||| | || |||||||||||||||    
T  5153428 ggcctggcctggcctatttaaaagcctggcctggcctgaaagcctatttacaggcctacttactattaaagtcactaaacattccattttatctactttt 5153527  T
Q  271 aaata 275  Q
    |||||    
T  5153528 aaata 5153532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 275
Target Start/End: Original strand, 27613399 - 27613491
Alignment:
Q  183 cctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctacttttaaata 275  Q
    |||||| ||||||||| | || ||||||||| |||||||| || |||||   |||||||  | |||| | || ||||||||||||||||||||    
T  27613399 cctatttaaaagtctggcctggcctgaaagcctatttacaggcctacttactattaaagtcactaaacattccattttatctacttttaaata 27613491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 275
Target Start/End: Original strand, 24889 - 24993
Alignment:
Q  171 ggcctagcctgacctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctactttt 270  Q
    ||||||| ||| |||||| ||||| |||   |||||||||||| |||||||| || |||||   |||||||  | |||| | || |||||||||||||||    
T  24889 ggcctagtctggcctatttaaaagcctggtctgacctgaaagcctatttacaggcctacttactattaaagccactaaacattccattttatctactttt 24988  T
Q  271 aaata 275  Q
    |||||    
T  24989 aaata 24993  T

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Target: scaffold0037 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 275
Target Start/End: Complemental strand, 81352 - 81248
Alignment:
Q  171 ggcctagcctgacctattcaaaagtctgacttgacctgaaagcttatttacatgcttactttaaattaaaggtattaaatagtctattttatctactttt 270  Q
    ||||| ||||| |||||| ||||| ||| | || ||||||||| |||||||| || |||||   |||||||  | |||| | || |||||||||||||||    
T  81352 ggcctggcctggcctatttaaaagcctggcctggcctgaaagcctatttacaggcctacttactattaaagtcactaaacattccattttatctactttt 81253  T
Q  271 aaata 275  Q
    |||||    
T  81252 aaata 81248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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