View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2640_high_5 (Length: 698)

Name: NF2640_high_5
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2640_high_5
NF2640_high_5
[»] chr4 (7 HSPs)
chr4 (9-680)||(38178034-38178705)
chr4 (157-403)||(5531862-5532108)
chr4 (165-406)||(5921917-5922158)
chr4 (157-406)||(5935382-5935631)
chr4 (59-95)||(5654607-5654643)
chr4 (59-95)||(10546155-10546191)
chr4 (59-95)||(18513257-18513293)
[»] chr2 (3 HSPs)
chr2 (157-439)||(11733379-11733661)
chr2 (59-95)||(18570979-18571015)
chr2 (59-95)||(25544488-25544524)
[»] chr8 (5 HSPs)
chr8 (156-394)||(40917000-40917238)
chr8 (158-401)||(45319609-45319852)
chr8 (57-94)||(1639495-1639532)
chr8 (66-95)||(27733861-27733890)
chr8 (57-94)||(34201063-34201100)
[»] chr1 (4 HSPs)
chr1 (186-403)||(45453136-45453353)
chr1 (58-95)||(3921673-3921710)
chr1 (60-96)||(2471228-2471264)
chr1 (59-95)||(11571592-11571628)
[»] chr7 (5 HSPs)
chr7 (162-352)||(34840062-34840252)
chr7 (66-101)||(35917390-35917425)
chr7 (61-95)||(30516373-30516407)
chr7 (59-95)||(38134422-38134458)
chr7 (59-95)||(44172906-44172942)
[»] chr3 (3 HSPs)
chr3 (195-401)||(53146696-53146902)
chr3 (59-95)||(40150587-40150623)
chr3 (59-95)||(34409358-34409394)
[»] scaffold0037 (1 HSPs)
scaffold0037 (59-94)||(102912-102947)
[»] chr6 (5 HSPs)
chr6 (59-94)||(6299519-6299554)
chr6 (59-94)||(6306329-6306364)
chr6 (57-90)||(33135837-33135870)
chr6 (58-90)||(1893390-1893422)
chr6 (59-95)||(19602197-19602233)
[»] scaffold0011 (1 HSPs)
scaffold0011 (59-95)||(240037-240073)
[»] chr5 (1 HSPs)
chr5 (59-95)||(11596471-11596507)


Alignment Details
Target: chr4 (Bit Score: 652; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 9 - 680
Target Start/End: Complemental strand, 38178705 - 38178034
Alignment:
Q  9 agcacagacattgacacgacatgccgtaaataatttgataaaatgacgtaataatactttgagaaaatgatataattcaatgtaatctcattttggtgct 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  38178705 agcacagacattgacacgacatgccgtaaataatttgataaaatgacgtaataatactttgagaaaatgatataattcaatgtaatctcctttcggtgct 38178606  T
Q  109 acaaactactttatgtgttgtgtgtttgagaaatttgtaatgtgtgaacaggatttcaagtgtgtcattcattgggaggtggaactggttctggaatggg 208  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38178605 acaaactacattatgtgttgtgtgtttgagaaatttgtaatgtgtgaacaggatttcaagtgtgtcattcattgggaggtggaactggttctggaatggg 38178506  T
Q  209 aacacttcttatttcgaagattagggaagagtatccggatcgtatgatgttgacgttttctgtgtttccttcacctaaggtttcagatacagttgtggag 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38178505 aacacttcttatttcgaagattagggaagagtatccggatcgtatgatgttgacgttttctgtgtttccttcacctaaggtttcagatacagttgtggag 38178406  T
Q  309 ccttacaatgcaaccctttctgtgcatcagcttgttgaaaatgcagatgaatgcatggttttggacaatgaggcactctatgatatttgcttccgtacat 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38178405 ccttacaatgcaaccctttctgtgcatcagcttgttgaaaatgcagatgaatgcatggttttggacaatgaggcactctatgatatttgcttccgtacat 38178306  T
Q  409 tgaagcttgccacaccaacttgtaggtttatcattcctttattctgtttgaattttactgcagtttatcctgtacattttatgataccttgaaattttga 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  38178305 tgaagcttgccacaccaacttgtaggtttatcattcctttattctttttgaattttactgcagtttatcctgtacattttatgataccttgcaattttga 38178206  T
Q  509 ttttgattgttattagtattactgttagataattagattttgatgaatattagatgattaaataatgattggcaaataggagagaacataatttatttga 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38178205 ttttgattgttattagtattactgttagataattagattttgatgaatattagatgattaaataatgattggcaaataggagagaacataatttatttga 38178106  T
Q  609 tgtcttttatagacagaatagaatatattagaatagaccagggtagataaattttgtagataactgtgttag 680  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38178105 tgtcttttatagacagaatagaatatattagaatagaccagggtagataaattttgtagataactgtgttag 38178034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 157 - 403
Target Start/End: Original strand, 5531862 - 5532108
Alignment:
Q  157 caggatttcaagtgtgtcattcattgggaggtggaactggttctggaatgggaacacttcttatttcgaagattagggaagagtatccggatcgtatgat 256  Q
    ||||||||||||| || || ||| | || || |||||||| |||||||||||||| ||||| ||||| ||||| |||||||| || || ||  | |||||    
T  5531862 caggatttcaagtatgccactcacttggtggaggaactgggtctggaatgggaactcttctgatttcaaagatcagggaagaatacccagacaggatgat 5531961  T
Q  257 gttgacgttttctgtgtttccttcacctaaggtttcagatacagttgtggagccttacaatgcaaccctttctgtgcatcagcttgttgaaaatgcagat 356  Q
    | | || || ||||| || ||||| ||||||||||| || || || || || || |||||||| ||||| ||||| || |||||||||||||||||||||    
T  5531962 gcttactttctctgttttcccttctcctaaggtttctgacactgtggttgaaccctacaatgctaccctctctgttcaccagcttgttgaaaatgcagat 5532061  T
Q  357 gaatgcatggttttggacaatgaggcactctatgatatttgcttccg 403  Q
    ||   ||||||| | |||||||| ||  | ||||| |||||||||||    
T  5532062 gaggtcatggttcttgacaatgaagccttgtatgacatttgcttccg 5532108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 165 - 406
Target Start/End: Complemental strand, 5922158 - 5921917
Alignment:
Q  165 caagtgtgtcattcattgggaggtggaactggttctggaatgggaacacttcttatttcgaagattagggaagagtatccggatcgtatgatgttgacgt 264  Q
    ||||| ||||||||| | || || |||||||| |||||||||||||| ||||| ||||| ||||| |||||||| || || ||  | |||||| | || |    
T  5922158 caagtatgtcattcactaggtggaggaactggatctggaatgggaacccttctcatttcaaagatcagggaagaatacccagacaggatgatgcttactt 5922059  T
Q  265 tttctgtgtttccttcacctaaggtttcagatacagttgtggagccttacaatgcaaccctttctgtgcatcagcttgttgaaaatgcagatgaatgcat 364  Q
    | ||||| || ||||| ||||||||||| || || || || || || |||||||| ||  | ||||| || |||||||||||||| ||||||||||| ||    
T  5922058 tctctgttttcccttctcctaaggtttctgacactgtggttgaaccctacaatgctactttatctgttcaccagcttgttgaaaacgcagatgaatgtat 5921959  T
Q  365 ggttttggacaatgaggcactctatgatatttgcttccgtac 406  Q
    |||| | || ||||| ||  | ||||||||||||||||||||    
T  5921958 ggttcttgataatgaagccttgtatgatatttgcttccgtac 5921917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 157 - 406
Target Start/End: Complemental strand, 5935631 - 5935382
Alignment:
Q  157 caggatttcaagtgtgtcattcattgggaggtggaactggttctggaatgggaacacttcttatttcgaagattagggaagagtatccggatcgtatgat 256  Q
    |||| |||||||| || |||||| | || || |||||||| ||||||||||| || ||| | ||||| ||||| |||||||| || || ||| | |||||    
T  5935631 caggttttcaagtatgccattcacttggtggaggaactgggtctggaatgggtacccttttgatttcaaagatcagggaagaatacccagataggatgat 5935532  T
Q  257 gttgacgttttctgtgtttccttcacctaaggtttcagatacagttgtggagccttacaatgcaaccctttctgtgcatcagcttgttgaaaatgcagat 356  Q
    | | || || ||||| || ||||| ||||||||||| || || || || || || |||||||| ||||| ||||| || |||||||||||||| ||||||    
T  5935531 gcttactttctctgttttcccttctcctaaggtttctgacactgtggttgaaccctacaatgctaccctatctgttcaccagcttgttgaaaacgcagat 5935432  T
Q  357 gaatgcatggttttggacaatgaggcactctatgatatttgcttccgtac 406  Q
    ||||| |||||| | || ||||| ||  | ||||||||||| ||||||||    
T  5935431 gaatgtatggttcttgataatgaagccttgtatgatatttgtttccgtac 5935382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 5654643 - 5654607
Alignment:
Q  59 ataatactttgagaaaatgatataattcaatgtaatc 95  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  5654643 ataataatttgagaaaatgacataattcaatgtaatc 5654607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 10546155 - 10546191
Alignment:
Q  59 ataatactttgagaaaatgatataattcaatgtaatc 95  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  10546155 ataataatttgagaaaatgacataattcaatgtaatc 10546191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 18513293 - 18513257
Alignment:
Q  59 ataatactttgagaaaatgatataattcaatgtaatc 95  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  18513293 ataataatttgagaaaatgacataattcaatgtaatc 18513257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 147; Significance: 4e-77; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 157 - 439
Target Start/End: Complemental strand, 11733661 - 11733379
Alignment:
Q  157 caggatttcaagtgtgtcattcattgggaggtggaactggttctggaatgggaacacttcttatttcgaagattagggaagagtatccggatcgtatgat 256  Q
    |||||||||||||||||||||||||||||||||| || ||||| || |||||||||||| | |||||||||||| | ||||| |||||||||||||||||    
T  11733661 caggatttcaagtgtgtcattcattgggaggtggcacgggttcaggcatgggaacacttttgatttcgaagattcgagaagaatatccggatcgtatgat 11733562  T
Q  257 gttgacgttttctgtgtttccttcacctaaggtttcagatacagttgtggagccttacaatgcaaccctttctgtgcatcagcttgttgaaaatgcagat 356  Q
    |||||||||||| |||||||||||||||||||| || ||||| ||||| || || || ||||| || |||||||| |||||||||||||| ||||| |||    
T  11733561 gttgacgttttcggtgtttccttcacctaaggtgtctgatacggttgtagaaccgtataatgccacgctttctgttcatcagcttgttgagaatgcggat 11733462  T
Q  357 gaatgcatggttttggacaatgaggcactctatgatatttgcttccgtacattgaagcttgccacaccaacttgtaggtttat 439  Q
    ||||||||||| ||||| || ||||| || ||||||||||| ||| | || ||||||||||| |||||||| |||| ||||||    
T  11733461 gaatgcatggtgttggataacgaggctctttatgatatttgtttcaggactttgaagcttgctacaccaacatgtaagtttat 11733379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 18570979 - 18571015
Alignment:
Q  59 ataatactttgagaaaatgatataattcaatgtaatc 95  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  18570979 ataataatttgagaaaatgacataattcaatgtaatc 18571015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 25544488 - 25544524
Alignment:
Q  59 ataatactttgagaaaatgatataattcaatgtaatc 95  Q
    |||||| |||||||||||||||||||||| |||||||    
T  25544488 ataataatttgagaaaatgatataattcagtgtaatc 25544524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 6e-39; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 156 - 394
Target Start/End: Complemental strand, 40917238 - 40917000
Alignment:
Q  156 acaggatttcaagtgtgtcattcattgggaggtggaactggttctggaatgggaacacttcttatttcgaagattagggaagagtatccggatcgtatga 255  Q
    ||||| |||||| | ||||||||  | |||||||||||||| || |||||||| ||  | || ||||| ||||| || ||||||||||| ||  | ||||    
T  40917238 acaggttttcaaatttgtcattcgcttggaggtggaactggatcaggaatgggtaccttgctcatttccaagatcagagaagagtatccagacagaatga 40917139  T
Q  256 tgttgacgttttctgtgtttccttcacctaaggtttcagatacagttgtggagccttacaatgcaaccctttctgtgcatcagcttgttgaaaatgcaga 355  Q
    ||||||| || || ||||| |||||||| |||||||| ||||| || ||||| || ||||||||||| || ||||| ||||| || ||||||||||||||    
T  40917138 tgttgactttctcagtgttcccttcaccaaaggtttctgataccgtggtggaaccctacaatgcaactctctctgttcatcaactagttgaaaatgcaga 40917039  T
Q  356 tgaatgcatggttttggacaatgaggcactctatgatat 394  Q
     |||||||||||| | || ||||||||||||||||||||    
T  40917038 cgaatgcatggttcttgataatgaggcactctatgatat 40917000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 158 - 401
Target Start/End: Original strand, 45319609 - 45319852
Alignment:
Q  158 aggatttcaagtgtgtcattcattgggaggtggaactggttctggaatgggaacacttcttatttcgaagattagggaagagtatccggatcgtatgatg 257  Q
    ||||||||||||||| || || |||||||| ||||| ||||||||||||||||| || || ||||| ||||| || ||||| || || ||||| ||||||    
T  45319609 aggatttcaagtgtgccactccttgggaggaggaacgggttctggaatgggaactctactcatttcaaagatcagagaagaataccctgatcgaatgatg 45319708  T
Q  258 ttgacgttttctgtgtttccttcacctaaggtttcagatacagttgtggagccttacaatgcaaccctttctgtgcatcagcttgttgaaaatgcagatg 357  Q
     | || || ||||| ||||| || || ||||| ||||| |||||||| ||||||||||||||||| |||||||| || ||  | || || ||||| ||||    
T  45319709 ctcactttctctgtctttccatctccaaaggtgtcagacacagttgttgagccttacaatgcaacactttctgttcaccaattggtggagaatgccgatg 45319808  T
Q  358 aatgcatggttttggacaatgaggcactctatgatatttgcttc 401  Q
    | || |||||  | || ||||| ||||||||||| || ||||||    
T  45319809 agtgtatggtccttgataatgaagcactctatgacatctgcttc 45319852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 1639495 - 1639532
Alignment:
Q  57 taataatactttgagaaaatgatataattcaatgtaat 94  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  1639495 taataatattttgagaaaatgacataattcaatgtaat 1639532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 95
Target Start/End: Original strand, 27733861 - 27733890
Alignment:
Q  66 tttgagaaaatgatataattcaatgtaatc 95  Q
    ||||||||||||||||||||||||||||||    
T  27733861 tttgagaaaatgatataattcaatgtaatc 27733890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 34201100 - 34201063
Alignment:
Q  57 taataatactttgagaaaatgatataattcaatgtaat 94  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  34201100 taataataatttgagaaaatgacataattcaatgtaat 34201063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 6e-36; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 186 - 403
Target Start/End: Complemental strand, 45453353 - 45453136
Alignment:
Q  186 ggtggaactggttctggaatgggaacacttcttatttcgaagattagggaagagtatccggatcgtatgatgttgacgttttctgtgtttccttcaccta 285  Q
    ||||| |||||||||||||||||||||||| | ||||| ||||| ||||| || || || ||||| |||||| | || || |||||||| || || ||||    
T  45453353 ggtggtactggttctggaatgggaacacttttgatttctaagatcagggaggaataccctgatcgaatgatgcttactttctctgtgttcccatctccta 45453254  T
Q  286 aggtttcagatacagttgtggagccttacaatgcaaccctttctgtgcatcagcttgttgaaaatgcagatgaatgcatggttttggacaatgaggcact 385  Q
    |||| || || || ||||| || ||||||||||| || || ||||| || || |||||||| ||||| ||||||||||||||| |||| ||||| || ||    
T  45453253 aggtatctgacactgttgttgaaccttacaatgctacactctctgtccaccaacttgttgagaatgctgatgaatgcatggttctggataatgaagctct 45453154  T
Q  386 ctatgatatttgcttccg 403  Q
    ||||||||||||||||||    
T  45453153 ctatgatatttgcttccg 45453136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 95
Target Start/End: Original strand, 3921673 - 3921710
Alignment:
Q  58 aataatactttgagaaaatgatataattcaatgtaatc 95  Q
    ||||||| ||||||||||||| ||||||||||||||||    
T  3921673 aataataatttgagaaaatgacataattcaatgtaatc 3921710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 2471264 - 2471228
Alignment:
Q  60 taatactttgagaaaatgatataattcaatgtaatct 96  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  2471264 taataatttgagaaaatgagataattcaatgtaatct 2471228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 11571592 - 11571628
Alignment:
Q  59 ataatactttgagaaaatgatataattcaatgtaatc 95  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  11571592 ataataatttgagaaaatgacataattcaatgtaatc 11571628  T

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Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 162 - 352
Target Start/End: Original strand, 34840062 - 34840252
Alignment:
Q  162 tttcaagtgtgtcattcattgggaggtggaactggttctggaatgggaacacttcttatttcgaagattagggaagagtatccggatcgtatgatgttga 261  Q
    ||||| ||||||||||| |||||||| ||||| || ||||||||||||||  |  | |||||||||||||| || || ||||| ||| | ||||||||||    
T  34840062 tttcaggtgtgtcattcgttgggaggaggaacgggatctggaatgggaactttgttgatttcgaagattagagaggaatatcctgataggatgatgttga 34840161  T
Q  262 cgttttctgtgtttccttcacctaaggtttcagatacagttgtggagccttacaatgcaaccctttctgtgcatcagcttgttgaaaatgc 352  Q
    ||||||| ||||||||||| || |||||||| ||||| ||||| |||||||| ||||| || |||||||| |||||| | ||||| |||||    
T  34840162 cgttttcggtgtttccttctccgaaggtttctgatactgttgttgagccttataatgctactctttctgttcatcagttggttgagaatgc 34840252  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 101
Target Start/End: Complemental strand, 35917425 - 35917390
Alignment:
Q  66 tttgagaaaatgatataattcaatgtaatctcattt 101  Q
    |||||||||||||||||||||||||||||| |||||    
T  35917425 tttgagaaaatgatataattcaatgtaatcacattt 35917390  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 61 - 95
Target Start/End: Complemental strand, 30516407 - 30516373
Alignment:
Q  61 aatactttgagaaaatgatataattcaatgtaatc 95  Q
    |||| ||||||||||||||||||||||||||||||    
T  30516407 aataatttgagaaaatgatataattcaatgtaatc 30516373  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 38134458 - 38134422
Alignment:
Q  59 ataatactttgagaaaatgatataattcaatgtaatc 95  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  38134458 ataataatttgagaaaatgacataattcaatgtaatc 38134422  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 44172942 - 44172906
Alignment:
Q  59 ataatactttgagaaaatgatataattcaatgtaatc 95  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  44172942 ataataatttgagaaaatgacataattcaatgtaatc 44172906  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 195 - 401
Target Start/End: Complemental strand, 53146902 - 53146696
Alignment:
Q  195 ggttctggaatgggaacacttcttatttcgaagattagggaagagtatccggatcgtatgatgttgacgttttctgtgtttccttcacctaaggtttcag 294  Q
    |||||||| |||||||||||  | || || ||||||||||| || ||||| ||  | |||||| | || || ||||| || || || || ||||| || |    
T  53146902 ggttctggcatgggaacactattgatatcaaagattagggaggaatatccagacagaatgatgcttactttctctgttttcccatctccaaaggtatctg 53146803  T
Q  295 atacagttgtggagccttacaatgcaaccctttctgtgcatcagcttgttgaaaatgcagatgaatgcatggttttggacaatgaggcactctatgatat 394  Q
    | |||||||| ||||| |||||||| ||  | ||||| || || || || |||||||||||||| || |||||| | |||||||| ||||| ||||| ||    
T  53146802 acacagttgttgagccatacaatgccacattatctgtccaccaactggtagaaaatgcagatgagtgtatggttcttgacaatgaagcactttatgacat 53146703  T
Q  395 ttgcttc 401  Q
    |||||||    
T  53146702 ttgcttc 53146696  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 40150623 - 40150587
Alignment:
Q  59 ataatactttgagaaaatgatataattcaatgtaatc 95  Q
    |||||| ||||||||||||||||||||||||||||||    
T  40150623 ataataatttgagaaaatgatataattcaatgtaatc 40150587  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 34409394 - 34409358
Alignment:
Q  59 ataatactttgagaaaatgatataattcaatgtaatc 95  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  34409394 ataatacttcgagaaaatgacataattcaatgtaatc 34409358  T

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Target: scaffold0037 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 94
Target Start/End: Original strand, 102912 - 102947
Alignment:
Q  59 ataatactttgagaaaatgatataattcaatgtaat 94  Q
    |||||| |||||||||||||||||||||||||||||    
T  102912 ataataatttgagaaaatgatataattcaatgtaat 102947  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 94
Target Start/End: Original strand, 6299519 - 6299554
Alignment:
Q  59 ataatactttgagaaaatgatataattcaatgtaat 94  Q
    |||||| |||||||||||||||||||||||||||||    
T  6299519 ataataatttgagaaaatgatataattcaatgtaat 6299554  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 94
Target Start/End: Original strand, 6306329 - 6306364
Alignment:
Q  59 ataatactttgagaaaatgatataattcaatgtaat 94  Q
    |||||| |||||||||||||||||||||||||||||    
T  6306329 ataataatttgagaaaatgatataattcaatgtaat 6306364  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 33135837 - 33135870
Alignment:
Q  57 taataatactttgagaaaatgatataattcaatg 90  Q
    |||||||| |||||||||||||||||||||||||    
T  33135837 taataataatttgagaaaatgatataattcaatg 33135870  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 1893422 - 1893390
Alignment:
Q  58 aataatactttgagaaaatgatataattcaatg 90  Q
    ||||||| |||||||||||||||||||||||||    
T  1893422 aataataatttgagaaaatgatataattcaatg 1893390  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 19602233 - 19602197
Alignment:
Q  59 ataatactttgagaaaatgatataattcaatgtaatc 95  Q
    |||||| |||||||||||||||||||||| |||||||    
T  19602233 ataataatttgagaaaatgatataattcagtgtaatc 19602197  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 240073 - 240037
Alignment:
Q  59 ataatactttgagaaaatgatataattcaatgtaatc 95  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  240073 ataataatttgagaaaataatataattcaatgtaatc 240037  T

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Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 11596507 - 11596471
Alignment:
Q  59 ataatactttgagaaaatgatataattcaatgtaatc 95  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  11596507 ataataatttgagaaaatgacataattcaatgtaatc 11596471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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