View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2640_high_6 (Length: 652)
Name: NF2640_high_6
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2640_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 230 - 549
Target Start/End: Complemental strand, 22536832 - 22536506
Alignment:
| Q |
230 |
atatccttcttcataatttttccaagataatatttctattttagttttcttaacaagttcataaagacacgatcatcatcctttccctatatttatttat |
329 |
Q |
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| T |
22536832 |
atatccttctttataatttttccaagataatatttctattttagttttcttaacaagttcataaagacacgatcatcatcctttccctatatttatttat |
22536733 |
T |
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| Q |
330 |
caatggcatagtttaaaatttgg-atgttttcatttaagttcacaagatcatgaaatgtttcgcaaagcccctaaactaatttgctgcatctaattcatc |
428 |
Q |
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|||||||||| ||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22536732 |
caatggcatattttaaaacttgggatgttttcatttaagttcataagatcatgaaatgtttcgcaaagcccctaaactaatttgctgcatctaattcatc |
22536633 |
T |
|
| Q |
429 |
aggaaaaataccaaggctattactactttcctcatgagtcatgatagagtaata------tataggtgacattgagcatataagttatacaaattcaagc |
522 |
Q |
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||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
22536632 |
aggaaaaataccaaggctattactactttcctcatcagtcctgatagagtaatatatatatataggtgacatttagcatataagttatacaaattcaagc |
22536533 |
T |
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| Q |
523 |
agtttccaccaagtaattggatatata |
549 |
Q |
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|||| |||||||||||||||||||||| |
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| T |
22536532 |
agttgccaccaagtaattggatatata |
22536506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 551 - 648
Target Start/End: Complemental strand, 22535420 - 22535323
Alignment:
| Q |
551 |
ttgtggcagttaaaaacattgggttaggaagcatttcatctttcttatggatacatatatttgtttttgttgtcaatgatttgcatttcatctcactc |
648 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22535420 |
ttgtggcagttaaaaacattgggttaggaagcatttcatctttcttatggatacgtatatttgtttttgttgtcaatgatttgcatttcatatcactc |
22535323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 22537035 - 22536941
Alignment:
| Q |
28 |
gtgattatagctttttaaaaaat-aaatcgtgaaaatgagcaaacctcgagatgatcaaccaagcaactaagaagttgatctagattatgtgatg |
121 |
Q |
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|||||||| |||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
22537035 |
gtgattatggctttttaaaaagttaaatcgtgaaaatgagcaaacctcgagattatcaaccaagcaattaagaagttgatctagattatgtgatg |
22536941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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