View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2640_high_8 (Length: 634)

Name: NF2640_high_8
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2640_high_8
NF2640_high_8
[»] chr4 (18 HSPs)
chr4 (1-597)||(565948-566544)
chr4 (126-411)||(553363-553648)
chr4 (120-211)||(55505235-55505326)
chr4 (368-428)||(1533903-1533963)
chr4 (323-407)||(53761706-53761790)
chr4 (230-396)||(1552709-1552878)
chr4 (235-341)||(1513407-1513513)
chr4 (316-474)||(1600493-1600651)
chr4 (367-428)||(3438479-3438540)
chr4 (323-411)||(644911-644999)
chr4 (323-406)||(659790-659873)
chr4 (129-179)||(1528365-1528415)
chr4 (322-432)||(7225792-7225902)
chr4 (129-179)||(12120304-12120354)
chr4 (366-407)||(641039-641080)
chr4 (137-206)||(1548559-1548628)
chr4 (151-211)||(546822-546882)
chr4 (368-428)||(1495835-1495895)
[»] chr2 (1 HSPs)
chr2 (235-411)||(45245015-45245191)
[»] chr5 (3 HSPs)
chr5 (323-422)||(41889473-41889572)
chr5 (369-406)||(32267599-32267636)
chr5 (369-407)||(41901472-41901510)
[»] chr6 (19 HSPs)
chr6 (345-406)||(12097121-12097182)
chr6 (323-407)||(6432242-6432326)
chr6 (157-407)||(6402775-6403025)
chr6 (226-428)||(11936188-11936390)
chr6 (226-428)||(11948168-11948370)
chr6 (446-500)||(12097187-12097241)
chr6 (329-407)||(7119244-7119322)
chr6 (329-407)||(7131722-7131800)
chr6 (323-407)||(6426592-6426676)
chr6 (323-396)||(6589268-6589341)
chr6 (161-206)||(19632358-19632403)
chr6 (323-407)||(6394945-6395029)
chr6 (323-407)||(6416047-6416131)
chr6 (330-407)||(6594540-6594617)
chr6 (349-386)||(6603157-6603194)
chr6 (255-287)||(6585291-6585323)
chr6 (159-211)||(6603332-6603384)
chr6 (323-407)||(7994116-7994200)
chr6 (156-212)||(14818296-14818352)
[»] chr3 (6 HSPs)
chr3 (126-407)||(51113715-51113996)
chr3 (329-407)||(13470666-13470744)
chr3 (156-407)||(51764374-51764625)
chr3 (373-428)||(1657378-1657433)
chr3 (322-408)||(51120826-51120912)
chr3 (126-206)||(514863-514943)
[»] chr7 (2 HSPs)
chr7 (333-407)||(10614684-10614758)
chr7 (334-435)||(7977670-7977771)
[»] chr8 (4 HSPs)
chr8 (235-411)||(34936093-34936269)
chr8 (373-428)||(28246208-28246263)
chr8 (230-299)||(32151289-32151358)
chr8 (369-422)||(44736604-44736657)


Alignment Details
Target: chr4 (Bit Score: 549; Significance: 0; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 1 - 597
Target Start/End: Original strand, 565948 - 566544
Alignment:
Q  1 ttatcatgcaaaacctggcaggcatatgcaannnnnnnnaaaagtaatttctttaagaaataattttgaaaacaaataacatcttactttagcaaagaag 100  Q
    |||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  565948 ttatcatgcaaaacctggcaggcatatgcaattttttttaaaagtaatttctttaagaaataattttgaaaacaaataacatcttactttagcaaagaag 566047  T
Q  101 gttgagtatagcaaagaagactactatgcactttataacaaccctccaacttgatttctctcagttgtgtgcagttttccaccaggtgtttcactccctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  566048 gttgagtatagcaaagaagactactatgcactttataacaaccctccaacttgatttctctcagttgtgtgcagttttccaccaggtgtttcactccctt 566147  T
Q  201 ctctgtaacattttgattatatcgcagtgacagctgcaaaagcccacgaaagtactttgagatcacatcgagtgtttcatcatcaacgcttgaacatgat 300  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  566148 ctctgtaacattttgattatattgcagtgacagctgcaaaagcccacgacagtactttgagatcacatagagtgtttcatcatcaacgcttgaacatgat 566247  T
Q  301 aaatccaacgtttcaagttttagaacttcaaagttcattccacgtagcttcacatttgtacagctggctaagttcaaatgtgtaatgttacaacatatcc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||    
T  566248 aaatccaacgtttcaagttttagaacttcaaagttcattccacgtagcttcacatttctacagctgcttaagttcaaatgtgtaatgttacaacatatcc 566347  T
Q  401 ttaaaacatgagtaatcccttcgtcagacatgccagaacaaccagtcaaattaagctgttgcaaattgggaaaacaattagcaatgaggaacacatttgc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  566348 ttaaaacatgagtaatcccttcgtcagacatgccagaacaaccagtcaaattaagctgttgcaaattgggaaaacaattagcaatgaggaacacatttgc 566447  T
Q  501 tggattgataggtttgtggcgaagaatgatcgacgtgatgttcaattggaaacaagcaatttgagagaaaagtacatcgagtttatagtagtagctc 597  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  566448 tggattgataggtttgtggcgaagaatgatcgacgtgatgttcaattggaaacaagcaatttgagagaaaagtacatcgagtttatagtagtagctc 566544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 126 - 411
Target Start/End: Original strand, 553363 - 553648
Alignment:
Q  126 atgcactttataacaaccctccaacttgatttctctcagttgtgtgcagttttccaccaggtgtttcactcccttctctgtaacattttgattatatcgc 225  Q
    ||||||||||| ||||||| |||| | ||| ||||| ||||||||||||||||| ||||  || |||||||| || ||||| ||||    |  |||   |    
T  553363 atgcactttatcacaaccccccaaatcgatctctctaagttgtgtgcagttttctaccacatgattcactcctttatctgtgacatcactacaataaaac 553462  T
Q  226 agtgacagctgcaaaagcccacgaaagtactttgagatcacatcgagtgtttcatcatcaacgcttgaacatgataaatccaacgtttcaagttttagaa 325  Q
    |   |||| ||||||||||||  | |   |||||| |||||||  |||| |||||||||||| |||| | |||| || | ||||   || ||||| ||||    
T  553463 aacaacagttgcaaaagcccagaacaactctttgaaatcacattaagtgcttcatcatcaactcttgtaaatgacaagttcaacacctccagtttgagaa 553562  T
Q  326 cttcaaagttcattccacgtagcttcacatttgtacagctggctaagttcaaatgtgtaatgttacaacatatccttaaaacatga 411  Q
    ||| |||||||| |  ||||| ||||||  ||| ||||| || ||||||||||||| |||||||||||||| ||||||||||||||    
T  553563 ctttaaagttcaatgtacgtaacttcactcttgaacagcgggttaagttcaaatgtctaatgttacaacatgtccttaaaacatga 553648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 120 - 211
Target Start/End: Complemental strand, 55505326 - 55505235
Alignment:
Q  120 actactatgcactttataacaaccctccaacttgatttctctcagttgtgtgcagttttccaccaggtgtttcactcccttctctgtaacat 211  Q
    |||| |||||||||||| |||||| | ||| ||||| ||||| ||||||||||||||||| | || ||||||||||||||||||||| ||||    
T  55505326 actagtatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacat 55505235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 428
Target Start/End: Complemental strand, 1533963 - 1533903
Alignment:
Q  368 ctaagttcaaatgtgtaatgttacaacatatccttaaaacatgagtaatcccttcgtcaga 428  Q
    |||||||||||||||| || ||||||||| |||||||||||||| |||| ||||| |||||    
T  1533963 ctaagttcaaatgtgtcatcttacaacatctccttaaaacatgactaataccttcttcaga 1533903  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 407
Target Start/End: Complemental strand, 53761790 - 53761706
Alignment:
Q  323 gaacttcaaagttcattccacgtagcttcacatttgtacagctggctaagttcaaatgtgtaatgttacaacatatccttaaaac 407  Q
    ||||| ||||||||||||||  |||||||||  ||| |||   |||||||||||||||  |||||||||||||| ||||||||||    
T  53761790 gaactacaaagttcattccaattagcttcactcttgaacactcggctaagttcaaatgcctaatgttacaacatctccttaaaac 53761706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 230 - 396
Target Start/End: Complemental strand, 1552878 - 1552709
Alignment:
Q  230 acagctgcaaaagcccacgaaagtactttgagatcacatcgagtgtttcatcatcaacgcttgaacatgataaatccaacgtttcaagttttagaacttc 329  Q
    |||||||||||||||||||| | | |||||| ||||||| |||||||||||||| ||   ||| |  ||| |||| ||||  ||| |||||  ||| |||    
T  1552878 acagctgcaaaagcccacgacaattctttgatatcacattgagtgtttcatcattaatatttgtatgtgacaaattcaacacttccagtttgggaatttc 1552779  T
Q  330 aaagttcattccacgtagcttcacatttgtacagct---ggctaagttcaaatgtgtaatgttacaacat 396  Q
    |||||||| |||| |||||||| | | | || | ||   |||||||||||||||| |||| |||||||||    
T  1552778 aaagttcagtccaagtagcttcccttctataaaactatgggctaagttcaaatgtctaatcttacaacat 1552709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 341
Target Start/End: Complemental strand, 1513513 - 1513407
Alignment:
Q  235 tgcaaaagcccacgaaagtactttgagatcacatcgagtgtttcatcatcaacgcttgaacatgataaatccaacgtttcaagttttagaacttcaaagt 334  Q
    ||||||||||||||| |  |||||||||| || | ||||||||||||||||||  ||| | |||| || | ||||  ||| |||||  ||||||||||||    
T  1513513 tgcaaaagcccacgacaacactttgagattacgtagagtgtttcatcatcaacatttgtaaatgacaagttcaacacttctagtttgggaacttcaaagt 1513414  T
Q  335 tcattcc 341  Q
    |||||||    
T  1513413 tcattcc 1513407  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 474
Target Start/End: Original strand, 1600493 - 1600651
Alignment:
Q  316 agttttagaacttcaaagttcattccacgtagcttcacatttgtacagctggctaagttcaaatgtgtaatgttacaacatatccttaaaacatgagtaa 415  Q
    ||||| |||||||||||||||||||| || |||||||   ||| |||   |||||||||||||||| |||| ||| || || |||||||||| |||  ||    
T  1600493 agtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgggctaagttcaaatgtctaattttagaaaatctccttaaaacttgacaaa 1600592  T
Q  416 tcccttcgtcagacatgccagaacaaccagtcaaattaagctgttgcaaattgggaaaa 474  Q
    | ||||| ||||| |||  |   ||||   |||||| |||| |||||||||||||||||    
T  1600593 taccttcttcagatatgttaatgcaactgctcaaatcaagcagttgcaaattgggaaaa 1600651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 367 - 428
Target Start/End: Complemental strand, 3438540 - 3438479
Alignment:
Q  367 gctaagttcaaatgtgtaatgttacaacatatccttaaaacatgagtaatcccttcgtcaga 428  Q
    ||||||||||||||| |||| ||||||||| |||||||||| ||| |||  |||||||||||    
T  3438540 gctaagttcaaatgtctaatcttacaacatctccttaaaacttgaataacaccttcgtcaga 3438479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 323 - 411
Target Start/End: Original strand, 644911 - 644999
Alignment:
Q  323 gaacttcaaagttcattccacgtagcttcacatttgtacagctggctaagttcaaatgtgtaatgttacaacatatccttaaaacatga 411  Q
    ||||||||||||||| |  | |||||||||   ||| |||||  | ||| ||||||||| ||||||||||||||||| |||||||||||    
T  644911 gaacttcaaagttcaatgtaagtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacatatcattaaaacatga 644999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 406
Target Start/End: Original strand, 659790 - 659873
Alignment:
Q  323 gaacttcaaagttcattccacgtagcttcacatttgtacagctggctaagttcaaatgtgtaatgttacaacatatccttaaaa 406  Q
    |||||||||| || ||| | ||||||||| |  ||| ||||| ||||||||| |||| | |||||||||||||| |||||||||    
T  659790 gaacttcaaaatttattactcgtagcttccctcttgaacagcaggctaagtttaaatatctaatgttacaacatctccttaaaa 659873  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 1528415 - 1528365
Alignment:
Q  129 cactttataacaaccctccaacttgatttctctcagttgtgtgcagttttc 179  Q
    ||||||| ||||||||| ||| || || |||||||||||||||||||||||    
T  1528415 cactttacaacaaccctgcaaatttatctctctcagttgtgtgcagttttc 1528365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 322 - 432
Target Start/End: Complemental strand, 7225902 - 7225792
Alignment:
Q  322 agaacttcaaagttcattccacgtagcttcacatttgtacagctggctaagttcaaatgtgtaatgttacaacatatccttaaaacatgagtaatccctt 421  Q
    |||||||||||||||||    |||||||||||  ||| ||||  || ||||||||||||| |||| ||||||||| ||| |||||| |||  || |||||    
T  7225902 agaacttcaaagttcatgttgcgtagcttcactcttggacagtaggataagttcaaatgtctaatcttacaacatctccgtaaaacttgacaaacccctt 7225803  T
Q  422 cgtcagacatg 432  Q
    | ||| |||||    
T  7225802 cttcatacatg 7225792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 12120354 - 12120304
Alignment:
Q  129 cactttataacaaccctccaacttgatttctctcagttgtgtgcagttttc 179  Q
    ||||||| ||||||||| ||| || || |||||||||||||||||||||||    
T  12120354 cactttacaacaaccctgcaaatttatctctctcagttgtgtgcagttttc 12120304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 407
Target Start/End: Original strand, 641039 - 641080
Alignment:
Q  366 ggctaagttcaaatgtgtaatgttacaacatatccttaaaac 407  Q
    |||||||||||||||| |||  ||||||||||||||||||||    
T  641039 ggctaagttcaaatgtctaacattacaacatatccttaaaac 641080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 1548628 - 1548559
Alignment:
Q  137 aacaaccctccaacttgatttctctcagttgtgtgcagttttccaccaggtgtttcactcccttctctgt 206  Q
    ||||||| ||||| || |||||||||||||| | |||||||||  | |  ||||||||||||||||||||    
T  1548628 aacaaccttccaaattaatttctctcagttgcgagcagttttcttctatatgtttcactcccttctctgt 1548559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 546822 - 546882
Alignment:
Q  151 ttgatttctctcagttgtgtgcagttttccaccaggtgtttcactcccttctctgtaacat 211  Q
    ||||| ||||| |||| |||||||||||| | ||  |||||||||||||||||||| ||||    
T  546822 ttgatctctcttagttttgtgcagttttctagcacatgtttcactcccttctctgtgacat 546882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 368 - 428
Target Start/End: Complemental strand, 1495895 - 1495835
Alignment:
Q  368 ctaagttcaaatgtgtaatgttacaacatatccttaaaacatgagtaatcccttcgtcaga 428  Q
    |||||| ||||||||| || ||||||||| ||||||||||||||  ||| ||||| |||||    
T  1495895 ctaagtccaaatgtgtcatcttacaacatctccttaaaacatgaccaataccttcttcaga 1495835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 235 - 411
Target Start/End: Complemental strand, 45245191 - 45245015
Alignment:
Q  235 tgcaaaagcccacgaaagtactttgagatcacatcgagtgtttcatcatcaacgcttgaacatgataaatccaacgtttcaagttttagaacttcaaagt 334  Q
    ||||||||||||||| |   |||||||||||||| ||||||||||||||||||  |||    ||| |||| ||||   ||||||||| ||||||||||||    
T  45245191 tgcaaaagcccacgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacctcaagttttggaacttcaaagt 45245092  T
Q  335 tcattccacgtagcttcacatttgtacagctggctaagttcaaatgtgtaatgttacaacatatccttaaaacatga 411  Q
    | ||||||||||  | ||   ||| |||||   ||||||| |||||  |||||||||||||| ||||||||||||||    
T  45245091 ttattccacgtaattccagtcttgaacagcaaactaagtttaaatgcctaatgttacaacatctccttaaaacatga 45245015  T

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Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 323 - 422
Target Start/End: Complemental strand, 41889572 - 41889473
Alignment:
Q  323 gaacttcaaagttcattccacgtagcttcacatttgtacagctggctaagttcaaatgtgtaatgttacaacatatccttaaaacatgagtaatcccttc 422  Q
    |||||| |||||||||| || ||||||||||  ||| ||| | || ||||||||||| | ||||||||||||||||||||||||| |||||||| |||||    
T  41889572 gaactttaaagttcatttcaagtagcttcactattgaacatccggataagttcaaatatctaatgttacaacatatccttaaaacttgagtaataccttc 41889473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 369 - 406
Target Start/End: Original strand, 32267599 - 32267636
Alignment:
Q  369 taagttcaaatgtgtaatgttacaacatatccttaaaa 406  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  32267599 taagttcaaatgtctaatgttacaacatatccttaaaa 32267636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 369 - 407
Target Start/End: Complemental strand, 41901510 - 41901472
Alignment:
Q  369 taagttcaaatgtgtaatgttacaacatatccttaaaac 407  Q
    ||||||||||||| ||||||||||||| |||||||||||    
T  41901510 taagttcaaatgtctaatgttacaacacatccttaaaac 41901472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 12097121 - 12097182
Alignment:
Q  345 tagcttcacatttgtacagctggctaagttcaaatgtgtaatgttacaacatatccttaaaa 406  Q
    ||||||||||||| |||||  || ||||||||||||||||||||||||||||||||||||||    
T  12097121 tagcttcacatttttacaggcggttaagttcaaatgtgtaatgttacaacatatccttaaaa 12097182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 323 - 407
Target Start/End: Original strand, 6432242 - 6432326
Alignment:
Q  323 gaacttcaaagttcattccacgtagcttcacatttgtacagctggctaagttcaaatgtgtaatgttacaacatatccttaaaac 407  Q
    |||||||||||||||||||| |||||||||| ||| ||||   |||||||||||||||| |||  ||||||||| ||||||||||    
T  6432242 gaacttcaaagttcattccatgtagcttcacttttatacaataggctaagttcaaatgtttaagtttacaacatctccttaaaac 6432326  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 157 - 407
Target Start/End: Original strand, 6402775 - 6403025
Alignment:
Q  157 tctctcagttgtgtgcagttttccaccaggtgtttcactcccttctctgtaacattttgattatatcgcagtgacagctgcaaaagcccacgaaagtact 256  Q
    |||||||||||||| |||||||| | ||  |||||| ||||||| ||||| ||||| | |  || || || | | || | ||||||||||| | | | ||    
T  6402775 tctctcagttgtgtacagttttctatcacatgtttcgctcccttttctgtgacattataacaatctctcaataatagtttcaaaagcccactacaattct 6402874  T
Q  257 ttgagatcacatcgagtgtttcatcatcaacgcttgaacatgataaatccaacgtttcaagttttagaacttcaaagttcattccacgtagcttcacatt 356  Q
    |||||||||||| ||||||||||||||||||  | | |  ||| || | ||||  ||| ||||   ||||| ||||||| |||||| ||||||||||  |    
T  6402875 ttgagatcacatagagtgtttcatcatcaaccttcgtatctgacaagttcaacacttctagttggggaactgcaaagtttattccaagtagcttcactct 6402974  T
Q  357 tgtacagctggctaagttcaaatgtgtaatgttacaacatatccttaaaac 407  Q
    || ||| |  | ||||||||||||  |||||||||||||| ||||||||||    
T  6402975 tgaacacccagttaagttcaaatgcctaatgttacaacatctccttaaaac 6403025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 226 - 428
Target Start/End: Complemental strand, 11936390 - 11936188
Alignment:
Q  226 agtgacagctgcaaaagcccacgaaagtactttgagatcacatcgagtgtttcatcatcaacgcttgaacatgataaatccaacgtttcaagttttagaa 325  Q
    |||||||| ||||||||||||| | |   ||||||||||  || ||||| || ||| ||||| |||| | |||| || ||||||   || |||||  |||    
T  11936390 agtgacagttgcaaaagcccactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaa 11936291  T
Q  326 cttcaaagttcattccacgtagcttcacatttgtacagctggctaagttcaaatgtgtaatgttacaacatatccttaaaacatgagtaatcccttcgtc 425  Q
    |||||||||||| |  |||||||||||   ||| |||||  | ||| ||||||||| ||||||||||||||||| |||||||||||  ||| ||||| ||    
T  11936290 cttcaaagttcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaacaataccttcttc 11936191  T
Q  426 aga 428  Q
    |||    
T  11936190 aga 11936188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 226 - 428
Target Start/End: Complemental strand, 11948370 - 11948168
Alignment:
Q  226 agtgacagctgcaaaagcccacgaaagtactttgagatcacatcgagtgtttcatcatcaacgcttgaacatgataaatccaacgtttcaagttttagaa 325  Q
    |||||||| ||||||||||||| | |   ||||||||||  || ||||| || ||| ||||| |||| | |||| || ||||||   || |||||  |||    
T  11948370 agtgacagttgcaaaagcccactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaa 11948271  T
Q  326 cttcaaagttcattccacgtagcttcacatttgtacagctggctaagttcaaatgtgtaatgttacaacatatccttaaaacatgagtaatcccttcgtc 425  Q
    |||||||||||| |  |||||||||||   ||| |||||  | ||| ||||||||| ||||||||||||||||| |||||||||||  ||| ||||| ||    
T  11948270 cttcaaagttcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaacaataccttcttc 11948171  T
Q  426 aga 428  Q
    |||    
T  11948170 aga 11948168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 446 - 500
Target Start/End: Original strand, 12097187 - 12097241
Alignment:
Q  446 tcaaattaagctgttgcaaattgggaaaacaattagcaatgaggaacacatttgc 500  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||| ||||||    
T  12097187 tcaaattaagttgttgcaaattggggaaacaattagcaatgaggaacagatttgc 12097241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 329 - 407
Target Start/End: Original strand, 7119244 - 7119322
Alignment:
Q  329 caaagttcattccacgtagcttcacatttgtacagctggctaagttcaaatgtgtaatgttacaacatatccttaaaac 407  Q
    |||||||||||||| ||||||||||  ||| ||||  |||||||||||||||| |||| ||| ||||| ||||||||||    
T  7119244 caaagttcattccaagtagcttcactcttgaacagtgggctaagttcaaatgtttaatcttagaacatctccttaaaac 7119322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 329 - 407
Target Start/End: Original strand, 7131722 - 7131800
Alignment:
Q  329 caaagttcattccacgtagcttcacatttgtacagctggctaagttcaaatgtgtaatgttacaacatatccttaaaac 407  Q
    |||||||||||||| ||||||||||  ||| ||||  |||||||||||||||| |||| ||| ||||| ||||||||||    
T  7131722 caaagttcattccaagtagcttcactcttgaacagtgggctaagttcaaatgtttaatcttagaacatctccttaaaac 7131800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 407
Target Start/End: Original strand, 6426592 - 6426676
Alignment:
Q  323 gaacttcaaagttcattccacgtagcttcacatttgtacagctggctaagttcaaatgtgtaatgttacaacatatccttaaaac 407  Q
    ||||| |||||||||||||| |||| ||||| |||| ||||   ||||||||||||||| |||  ||||||||| ||||||||||    
T  6426592 gaactgcaaagttcattccatgtagtttcacgtttgaacagaaagctaagttcaaatgtttaagcttacaacatttccttaaaac 6426676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 323 - 396
Target Start/End: Complemental strand, 6589341 - 6589268
Alignment:
Q  323 gaacttcaaagttcattccacgtagcttcacatttgtacagctggctaagttcaaatgtgtaatgttacaacat 396  Q
    ||||| |||||||||||||| |||||||||| ||  |||||  |||||||||||||||  |||| |||||||||    
T  6589341 gaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatcttacaacat 6589268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 19632358 - 19632403
Alignment:
Q  161 tcagttgtgtgcagttttccaccaggtgtttcactcccttctctgt 206  Q
    |||||||| |||||||||| |||| |||||||||||||||||||||    
T  19632358 tcagttgtttgcagttttctaccacgtgtttcactcccttctctgt 19632403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 323 - 407
Target Start/End: Original strand, 6394945 - 6395029
Alignment:
Q  323 gaacttcaaagttcattccacgtagcttcacatttgtacagctggctaagttcaaatgtgtaatgttacaacatatccttaaaac 407  Q
    ||||| |||||||||||||| |||| ||||| |||| ||||   ||||||||||||||| |||  ||||||||| || |||||||    
T  6394945 gaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaaatgtttaagcttacaacatttctttaaaac 6395029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 323 - 407
Target Start/End: Original strand, 6416047 - 6416131
Alignment:
Q  323 gaacttcaaagttcattccacgtagcttcacatttgtacagctggctaagttcaaatgtgtaatgttacaacatatccttaaaac 407  Q
    ||||| |||||| ||||||| |||||||||| ||| ||||   |||||||||||||||   ||| |||||||||||| |||||||    
T  6416047 gaactacaaagtccattccatgtagcttcacttttttacaaaaggctaagttcaaatgcccaatcttacaacatatctttaaaac 6416131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 407
Target Start/End: Complemental strand, 6594617 - 6594540
Alignment:
Q  330 aaagttcattccacgtagcttcacatttgtacagctggctaagttcaaatgtgtaatgttacaacatatccttaaaac 407  Q
    |||||| |||||| ||||||||||  ||| ||| | || ||||| |||||||||||| ||| ||||| ||||||||||    
T  6594617 aaagtttattccatgtagcttcactcttgaacacccggataagtacaaatgtgtaatcttataacatctccttaaaac 6594540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 386
Target Start/End: Complemental strand, 6603194 - 6603157
Alignment:
Q  349 ttcacatttgtacagctggctaagttcaaatgtgtaat 386  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  6603194 ttcacatctgtacaactggctaagttcaaatgtgtaat 6603157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 255 - 287
Target Start/End: Complemental strand, 6585323 - 6585291
Alignment:
Q  255 ctttgagatcacatcgagtgtttcatcatcaac 287  Q
    |||||||||||||| ||||||||||||||||||    
T  6585323 ctttgagatcacatagagtgtttcatcatcaac 6585291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 6603384 - 6603332
Alignment:
Q  159 tctcagttgtgtgcagttttccaccaggtgtttcactcccttctctgtaacat 211  Q
    |||||||||| |||||||||| ||||  ||||||||||| |||||||| ||||    
T  6603384 tctcagttgtttgcagttttctaccacatgtttcactcctttctctgtgacat 6603332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 323 - 407
Target Start/End: Complemental strand, 7994200 - 7994116
Alignment:
Q  323 gaacttcaaagttcattccacgtagcttcacatttgtacagctggctaagttcaaatgtgtaatgttacaacatatccttaaaac 407  Q
    ||||| |||||||||||||  ||||||||||  |||||||   ||||| |||||||||  | || ||||||||| ||||||||||    
T  7994200 gaactacaaagttcattcctagtagcttcactcttgtacaatcggctatgttcaaatgcctgatcttacaacatttccttaaaac 7994116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 14818296 - 14818352
Alignment:
Q  156 ttctctcagttgtgtgcagttttccaccaggtgtttcactcccttctctgtaacatt 212  Q
    ||||||||| |||||||||||||| || |  |||||||| ||||||||||| |||||    
T  14818296 ttctctcagctgtgtgcagttttctactacatgtttcacacccttctctgtgacatt 14818352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 126 - 407
Target Start/End: Complemental strand, 51113996 - 51113715
Alignment:
Q  126 atgcactttataacaaccctccaacttgatttctctcagttgtgtgcagttttccaccaggtgtttcactcccttctctgtaacattttgattatatcgc 225  Q
    |||||||||| |||||||||  || || || ||||| |||| |||||| ||||| ||||  || ||||||||||||||||| ||||  | |  || |  |    
T  51113996 atgcactttaaaacaaccctttaaattaatctctcttagttttgtgcatttttctaccacatgcttcactcccttctctgtgacatggtaacaatttttc 51113897  T
Q  226 agtgacagctgcaaaagcccacgaaagtactttgagatcacatcgagtgtttcatcatcaacgcttgaacatgataaatccaacgtttcaagttttagaa 325  Q
    ||| |||| ||||||||||||| | |   ||| |||||||||| ||||||||||||||||||  ||| |  ||| || || |||   || |||||  ||     
T  51113896 agtaacagttgcaaaagcccacaacaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagtttgggag 51113797  T
Q  326 cttcaaagttcattccacgtagcttcacatttgtacagctggctaagttcaaatgtgtaatgttacaacatatccttaaaac 407  Q
    ||||||||||||||||| |||||||||  |||| ||||   ||||| ||||||||  |||| ||||||||| || |||||||    
T  51113796 cttcaaagttcattccaagtagcttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaac 51113715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 329 - 407
Target Start/End: Complemental strand, 13470744 - 13470666
Alignment:
Q  329 caaagttcattccacgtagcttcacatttgtacagctggctaagttcaaatgtgtaatgttacaacatatccttaaaac 407  Q
    |||||||||||||| |||||||||| ||| ||||   |||||||||||||||  |||| ||||||||||||||||||||    
T  13470744 caaagttcattccaagtagcttcacttttttacaataggctaagttcaaatgcctaatcttacaacatatccttaaaac 13470666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 156 - 407
Target Start/End: Complemental strand, 51764625 - 51764374
Alignment:
Q  156 ttctctcagttgtgtgcagttttccaccaggtgtttcactcccttctctgtaacattttgattatatcgcagtgacagctgcaaaagcccacgaaagtac 255  Q
    |||||||| ||||||||||||||| ||||  |||||||||||||||||  | ||||| | |  || |  |||| | || ||||||||||| | | | | |    
T  51764625 ttctctcaattgtgtgcagttttcaaccacatgtttcactcccttctccttgacattatcacaatgttccagtaatagttgcaaaagcccgcaacaattc 51764526  T
Q  256 tttgagatcacatcgagtgtttcatcatcaacgcttgaacatgataaatccaacgtttcaagttttagaacttcaaagttcattccacgtagcttcacat 355  Q
    ||||||||| ||| |||||||| |||||||||  ||| | |||| || || |||   || || ||  ||||| |||||||||||||| ||||||||||      
T  51764525 tttgagatcgcatagagtgttttatcatcaacttttgtaaatgacaagtctaacacctccagcttcggaactgcaaagttcattccaagtagcttcactc 51764426  T
Q  356 ttgtacagctggctaagttcaaatgtgtaatgttacaacatatccttaaaac 407  Q
    ||| |||   || || |||||||||  |||| ||| ||||| ||||||||||    
T  51764425 ttgaacattcggataggttcaaatgcctaatcttagaacatctccttaaaac 51764374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 428
Target Start/End: Original strand, 1657378 - 1657433
Alignment:
Q  373 ttcaaatgtgtaatgttacaacatatccttaaaacatgagtaatcccttcgtcaga 428  Q
    ||||||||| ||||||||||||||||| |||||||||||  ||| ||||| |||||    
T  1657378 ttcaaatgtctaatgttacaacatatcattaaaacatgaacaataccttcttcaga 1657433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 322 - 408
Target Start/End: Complemental strand, 51120912 - 51120826
Alignment:
Q  322 agaacttcaaagttcattccacgtagcttcacatttgtacagctggctaagttcaaatgtgtaatgttacaacatatccttaaaaca 408  Q
    ||||||||||||||||||||| | || |||||  ||| ||| | ||  |||||||| ||| |||||||||||||| ||| |||||||    
T  51120912 agaacttcaaagttcattccatgcagtttcactcttgaacaaccggtgaagttcaagtgtctaatgttacaacatctccataaaaca 51120826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 126 - 206
Target Start/End: Complemental strand, 514943 - 514863
Alignment:
Q  126 atgcactttataacaaccctccaacttgatttctctcagttgtgtgcagttttccaccaggtgtttcactcccttctctgt 206  Q
    ||||||||||| ||||||    || ||||| ||||||||| |||||||||||| |||||  || ||||||||| |||||||    
T  514943 atgcactttattacaacctcttaaattgatctctctcagtcgtgtgcagtttttcaccacatgcttcactcccgtctctgt 514863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 333 - 407
Target Start/End: Original strand, 10614684 - 10614758
Alignment:
Q  333 gttcattccacgtagcttcacatttgtacagctggctaagttcaaatgtgtaatgttacaacatatccttaaaac 407  Q
    |||||||||| |||||||||| ||| ||||   |||||||||||||||  |||| ||||||||||||||||||||    
T  10614684 gttcattccaagtagcttcacttttttacaataggctaagttcaaatgcctaatcttacaacatatccttaaaac 10614758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 334 - 435
Target Start/End: Original strand, 7977670 - 7977771
Alignment:
Q  334 ttcattccacgtagcttcacatttgtacagctggctaagttcaaatgtgtaatgttacaacatatccttaaaacatgagtaatcccttcgtcagacatgc 433  Q
    |||||||||||||| |||||  ||| ||| | ||||| ||| |||||| |||||||||||||| |||||||||| |||  ||| ||||| ||||| ||||    
T  7977670 ttcattccacgtagattcacccttgaacaacaggctaggtttaaatgtctaatgttacaacatctccttaaaacttgaccaataccttcttcagaaatgc 7977769  T
Q  434 ca 435  Q
    ||    
T  7977770 ca 7977771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 235 - 411
Target Start/End: Complemental strand, 34936269 - 34936093
Alignment:
Q  235 tgcaaaagcccacgaaagtactttgagatcacatcgagtgtttcatcatcaacgcttgaacatgataaatccaacgtttcaagttttagaacttcaaagt 334  Q
    ||||||||||||||| |   ||||| |||  ||| |||||||| ||||||||| |||| | |||| || ||||||   || |||||| |||| ||||||     
T  34936269 tgcaaaagcccacgacaactctttgcgatggcatagagtgttttatcatcaactcttgtatatgacaagtccaacacctctagttttggaacatcaaaga 34936170  T
Q  335 tcattccacgtagcttcacatttgtacagctggctaagttcaaatgtgtaatgttacaacatatccttaaaacatga 411  Q
    ||||||   | || ||||| |||| |||   ||| |||| ||||||| |||||| ||||||| ||||||||||||||    
T  34936169 tcattctgtgaaggttcacttttgaacaatcggccaagtacaaatgtctaatgtcacaacatctccttaaaacatga 34936093  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 428
Target Start/End: Complemental strand, 28246263 - 28246208
Alignment:
Q  373 ttcaaatgtgtaatgttacaacatatccttaaaacatgagtaatcccttcgtcaga 428  Q
    ||||||||| ||||||||||||||||| |||||||||||  ||| ||||| |||||    
T  28246263 ttcaaatgtctaatgttacaacatatcattaaaacatgaacaataccttcttcaga 28246208  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 32151289 - 32151358
Alignment:
Q  230 acagctgcaaaagcccacgaaagtactttgagatcacatcgagtgtttcatcatcaacgcttgaacatga 299  Q
    |||| ||||||||||||| | |   |||||||||||||| |||||||||||||||||  |||| ||||||    
T  32151289 acagttgcaaaagcccactacaactctttgagatcacatagagtgtttcatcatcaaaccttgtacatga 32151358  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 422
Target Start/End: Original strand, 44736604 - 44736657
Alignment:
Q  369 taagttcaaatgtgtaatgttacaacatatccttaaaacatgagtaatcccttc 422  Q
    |||||| |||||||| |||||| ||||| ||||||||||||||| ||| |||||    
T  44736604 taagttaaaatgtgttatgttagaacatgtccttaaaacatgagaaataccttc 44736657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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