View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2640_low_10 (Length: 573)
Name: NF2640_low_10
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2640_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 551
Target Start/End: Original strand, 14735466 - 14736005
Alignment:
| Q |
1 |
ctaactcgcttaaagcaagctaaactgacctggagcgagtaaactccagagagaactagcctgaagcgagtcaggagcgagtaactagcttataactcgc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
14735466 |
ctaactcgcttaaagcaagctaaactgacctggagcgagtaaactccagagagaactcgcctgaagcgagt-----------aactagcttataactcgc |
14735554 |
T |
|
| Q |
101 |
atggagtgagttttgacagcacagttgtgttgtcgacttgttccgtagttctgtagtgcagtctggggcccagttttgctgtattttcttataatatgta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
14735555 |
atggagtgagttttgacagcacagttgtgttgtcgactcgttccgtagttctgtagtgcagtccggggcccagttttgctgtattttcttataatatgta |
14735654 |
T |
|
| Q |
201 |
accctcaataccagtgacccatatgctagtgttnnnnnnnttactttaaggaaaatcaacaagtaagtattggcgttattaagtgaagcataatatttga |
300 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
14735655 |
accctcaataccagtgacccatatgctagtgttacaaaaattactttaaggaaaatcaacaagtaagtattggcgttattaagcgaagcataatatttga |
14735754 |
T |
|
| Q |
301 |
gagcatgattatgtatacggtatgtgtgggtagtatgctaacccttaatgtatgggaagacccgttctctagagtaacgtttagagtaatgtctttcaca |
400 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
14735755 |
gagcatgattatgtatatggtatgtgtgggtagtatgctaacccttaatgtatgggaagacccgttctctagagtaatgtttagagtaatgtctttcaca |
14735854 |
T |
|
| Q |
401 |
aaggaaattatgtattctaaggaagtatgttcaaaaagggtattaggatataaggaagagaaaaattcaactagataaaggaatgtttcgtgactacatt |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
14735855 |
aaggaaattatgtattctaaggaagtatgttcaaaaagggtattaggatataaggaagataaaaattcaactagataaaggaatgtttcgtgactacata |
14735954 |
T |
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| Q |
501 |
tagagatacttcatgaggtaagccatccaccgtactaccttgcgttctgtg |
551 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14735955 |
tagagatacttcatgaggtaagccatccaccgtactaccttgcattctgtg |
14736005 |
T |
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