View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2640_low_11 (Length: 507)

Name: NF2640_low_11
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2640_low_11
NF2640_low_11
[»] chr6 (31 HSPs)
chr6 (1-481)||(31284503-31284983)
chr6 (1-443)||(26729210-26729674)
chr6 (1-443)||(26623232-26623697)
chr6 (274-350)||(26623636-26623712)
chr6 (274-350)||(26729613-26729689)
chr6 (373-468)||(27214648-27214743)
chr6 (373-468)||(27234485-27234580)
chr6 (367-429)||(28234830-28234892)
chr6 (108-161)||(26647031-26647084)
chr6 (108-161)||(26752999-26753052)
chr6 (124-161)||(26802998-26803035)
chr6 (368-429)||(28181381-28181442)
chr6 (368-429)||(28227217-28227278)
chr6 (367-429)||(26937373-26937435)
chr6 (127-161)||(27610716-27610750)
chr6 (367-429)||(28185633-28185695)
chr6 (367-429)||(28297571-28297633)
chr6 (367-429)||(28325744-28325806)
chr6 (367-429)||(28514440-28514502)
chr6 (124-161)||(25539095-25539132)
chr6 (108-161)||(27592598-27592651)
chr6 (108-161)||(27604281-27604334)
chr6 (108-161)||(27677197-27677250)
chr6 (108-161)||(27679502-27679555)
chr6 (108-161)||(27705981-27706034)
chr6 (377-413)||(25580002-25580038)
chr6 (377-413)||(26056209-26056245)
chr6 (377-413)||(26076179-26076215)
chr6 (367-467)||(27337923-27338023)
chr6 (367-467)||(27398663-27398763)
chr6 (367-419)||(28098215-28098267)
[»] scaffold0038 (3 HSPs)
scaffold0038 (367-429)||(34992-35054)
scaffold0038 (368-429)||(27715-27776)
scaffold0038 (367-429)||(117059-117121)
[»] chr1 (1 HSPs)
chr1 (324-413)||(28127481-28127570)
[»] chr2 (1 HSPs)
chr2 (367-423)||(3279976-3280032)
[»] chr4 (4 HSPs)
chr4 (367-436)||(5090806-5090875)
chr4 (124-160)||(18679149-18679185)
chr4 (124-160)||(18723674-18723710)
chr4 (124-160)||(18731093-18731129)
[»] scaffold0019 (1 HSPs)
scaffold0019 (367-423)||(58140-58196)


Alignment Details
Target: chr6 (Bit Score: 436; Significance: 0; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Complemental strand, 31284983 - 31284503
Alignment:
Q  1 ttaagattgaatgatttaggtacataaattaaaggcaaaacaagattaaagggaagtagagtacctctgactacaatcacttgacaagtctggtgtctga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31284983 ttaagattgaatgatttaggtacataaattaaaggcaaaacaagattcaagggaagtagagtacctctgactacaatcacttgacaagtctggtgtctga 31284884  T
Q  101 ttaaaagctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagttggtgaacaaatnnnnnnncaatcacatctatatcttgac 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  31284883 ttaaaagctatcttcccagtaagcttgtattcatatctattcatgcccaacaagataagttggtgaacaaataaaaaaacaatcacatctatatcttgac 31284784  T
Q  201 gaatatatcatacaattctaattgttttgacatacaataactagtatttgtttaaatatataaataaaaaatgtttcccttttaagcatttatatggaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31284783 gaatatatcatacaattctaattgttttgacatacaataactaatatttgtttaaatatataaataaaaaatgtttcccttttaagcatttatatggaat 31284684  T
Q  301 gattgaggaataaaaattgaagaaggcaaaacaagattgaagtgaagtaggctacccaggagaacgatggtcgccagacaagttagctgcttgagtaaga 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31284683 gattgaggaataaaaattgaagaaggcaaaacaagattgaagtgaagaaggctacccaggagaacgatggtcgccagacaagttagctgcttgagtaaga 31284584  T
Q  401 gctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgcttagcctatgctactcca 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  31284583 gctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgcttagccaatgcttctcca 31284503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 26729674 - 26729210
Alignment:
Q  1 ttaagattgaatgatttaggtacataaattaaag---gcaaaacaagattaaagggaagtagagtacctctgactacaat---cacttgacaagtctggt 94  Q
    |||||||||||||||||||| | ||||| |||||   ||||||||||||| ||| |||||||||||||  ||||||||||   | |||||| |||| |||    
T  26729674 ttaagattgaatgatttaggaatataaaataaagaaggcaaaacaagattcaagtgaagtagagtacccttgactacaatggtcgcttgacgagtccggt 26729575  T
Q  95 gtctgattaaaagctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagttggtgaacaaatnnnnnnncaatcacatctatat 194  Q
    ||||| | || || |||||||| || ||||||||||||||||||||| ||||| ||||||||   ||| || ||||||        |||||||| |||||    
T  26729574 gtctggtcaagagttatcttcctagtaagcttgtattcatatctattaatgcc-aacaagat---ttgttgcacaaataaaaaaataatcacatttatat 26729479  T
Q  195 cttgacgaatatatcatacaattctaattgttttgacatacaa-taactagtatttgtttaaatatataaataaaaaat---gtttcccttttaagcatt 290  Q
    ||| || | ||| |||||||||||||| |||||||| |||||| || ||| |||||||||||||||||||| |||||||   ||||||||||||||||||    
T  26729478 cttaacaattatgtcatacaattctaaatgttttgatatacaaatacctaatatttgtttaaatatataaacaaaaaattgtgtttcccttttaagcatt 26729379  T
Q  291 tatatggaatgattgaggaataaaaattgaagaa----------------ggcaaaacaagattgaagtgaagtaggctacccaggagaacgatggtcgc 374  Q
     |||||||||||||| ||||||| ||||||||||                |||||||||||||||||||||||||||||||||||||  ||||||||| |    
T  26729378 aatatggaatgattggggaataagaattgaagaaataaagcatatatgaaggcaaaacaagattgaagtgaagtaggctacccaggatgacgatggtctc 26729279  T
Q  375 cagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattat 443  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||| || ||||||||    
T  26729278 cagacaagttagctgcttgtgcaagagctatcttccatttttgcaacctctccatattatatgtattat 26729210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 26623697 - 26623232
Alignment:
Q  1 ttaagattgaatgatttaggtacataaattaaag---gcaaaacaagattaaagggaagtagagtacctctgactacaat---cacttgacaagtctggt 94  Q
    |||||||||||||||||||| | ||||| |||||   ||||||||||||| ||| |||||||||||||  ||||||||||   | |||||| |||| |||    
T  26623697 ttaagattgaatgatttaggaatataaaataaagaaggcaaaacaagattcaagtgaagtagagtacccttgactacaatggtcgcttgacgagtccggt 26623598  T
Q  95 gtctgattaaaagctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagttggtgaacaaatnnnnnnnc-aatcacatctata 193  Q
    ||||| | || || |||||||| || ||||||||||||||||||||| ||||| ||||||||   ||| || ||||||         |||||||| ||||    
T  26623597 gtctggtcaagagttatcttcctagtaagcttgtattcatatctattaatgcc-aacaagat---ttgttgcacaaataaaaaaaataatcacatttata 26623502  T
Q  194 tcttgacgaatatatcatacaattctaattgttttgacatacaa-taactagtatttgtttaaatatataaataaaaaat---gtttcccttttaagcat 289  Q
    |||| || | ||| |||||||||||||| |||||||| |||||| || ||| |||||||||||||||||||| |||||||   |||||||||||||||||    
T  26623501 tcttaacaattatgtcatacaattctaaatgttttgatatacaaatacctaatatttgtttaaatatataaacaaaaaattgtgtttcccttttaagcat 26623402  T
Q  290 ttatatggaatgattgaggaataaaaattgaagaa----------------ggcaaaacaagattgaagtgaagtaggctacccaggagaacgatggtcg 373  Q
    | |||||||||||||| ||||||| ||||||||||                |||||||||||||||||||||||||||||||||||||  |||||||||     
T  26623401 taatatggaatgattggggaataagaattgaagaaataaagcatatatgaaggcaaaacaagattgaagtgaagtaggctacccaggatgacgatggtct 26623302  T
Q  374 ccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattat 443  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||| || ||||||||    
T  26623301 ccagacaagttagctgcttgtgcaagagctatcttccatttttgcaacctctccatattatatgtattat 26623232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 350
Target Start/End: Complemental strand, 26623712 - 26623636
Alignment:
Q  274 tttcccttttaagcatttatatggaatgattgaggaataaaaattgaagaaggcaaaacaagattgaagtgaagtag 350  Q
    |||||| ||||||| || | || |||||||| ||||||| ||| | ||||||||||||||||||| |||||||||||    
T  26623712 tttcccatttaagctttaagattgaatgatttaggaatataaaataaagaaggcaaaacaagattcaagtgaagtag 26623636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 350
Target Start/End: Complemental strand, 26729689 - 26729613
Alignment:
Q  274 tttcccttttaagcatttatatggaatgattgaggaataaaaattgaagaaggcaaaacaagattgaagtgaagtag 350  Q
    |||||| ||||||| || | || |||||||| ||||||| ||| | ||||||||||||||||||| |||||||||||    
T  26729689 tttcccatttaagctttaagattgaatgatttaggaatataaaataaagaaggcaaaacaagattcaagtgaagtag 26729613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 373 - 468
Target Start/End: Complemental strand, 27214743 - 27214648
Alignment:
Q  373 gccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgcttagc 468  Q
    |||||| |||||||| |||||  ||||||||||||||||||| |||||||  ||||| |  ||  | |||| ||| ||||||||||||||||||||    
T  27214743 gccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctcttcatgcttagc 27214648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 373 - 468
Target Start/End: Original strand, 27234485 - 27234580
Alignment:
Q  373 gccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgcttagc 468  Q
    |||||| |||||||| |||||  ||||||||||||||||||| |||||||  ||||| |  ||  | |||| ||| ||||||||||||||||||||    
T  27234485 gccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctcttcatgcttagc 27234580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 429
Target Start/End: Complemental strand, 28234892 - 28234830
Alignment:
Q  367 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 429  Q
    ||||| |||||| ||||||| || |||||||||||| ||||||||||| |||||||| |||||    
T  28234892 atggtggccagaaaagttagatgtttgagtaagagccatcttccatttctgcaacctctccat 28234830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 26647084 - 26647031
Alignment:
Q  108 ctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagtt 161  Q
    |||||||||||  || |||||||||||||||||||||| || ||||||||||||    
T  26647084 ctatcttcccaataaacttgtattcatatctattcatgtcccacaagataagtt 26647031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 26753052 - 26752999
Alignment:
Q  108 ctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagtt 161  Q
    |||||||||||  || |||||||||||||||||||||| || ||||||||||||    
T  26753052 ctatcttcccaataaacttgtattcatatctattcatgtcccacaagataagtt 26752999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 124 - 161
Target Start/End: Complemental strand, 26803035 - 26802998
Alignment:
Q  124 cttgtattcatatctattcatgcccaacaagataagtt 161  Q
    |||||||||||||||||||||| |||||||||||||||    
T  26803035 cttgtattcatatctattcatgtccaacaagataagtt 26802998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 368 - 429
Target Start/End: Complemental strand, 28181442 - 28181381
Alignment:
Q  368 tggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 429  Q
    |||| |||||| |||||||| | |||||||||||| ||||||||||| |||||||| |||||    
T  28181442 tggtggccagagaagttagcagtttgagtaagagcaatcttccatttctgcaacctatccat 28181381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 368 - 429
Target Start/End: Complemental strand, 28227278 - 28227217
Alignment:
Q  368 tggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 429  Q
    |||| |||||| |||||||| | |||||||||||| ||||||||||| |||||||| |||||    
T  28227278 tggtggccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctatccat 28227217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 429
Target Start/End: Complemental strand, 26937435 - 26937373
Alignment:
Q  367 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 429  Q
    ||||| |||||||||||| || |||||  |||||||||||||||||||  ||||||| |||||    
T  26937435 atggtggccagacaagtttgccgcttggttaagagctatcttccatttccgcaacctctccat 26937373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 127 - 161
Target Start/End: Original strand, 27610716 - 27610750
Alignment:
Q  127 gtattcatatctattcatgcccaacaagataagtt 161  Q
    |||||||||||||||||||||||| ||||||||||    
T  27610716 gtattcatatctattcatgcccaataagataagtt 27610750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 429
Target Start/End: Complemental strand, 28185695 - 28185633
Alignment:
Q  367 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 429  Q
    ||||| |||||| |||||||| | ||||||||||||  |||||||||| |||||||| |||||    
T  28185695 atggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccat 28185633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 429
Target Start/End: Original strand, 28297571 - 28297633
Alignment:
Q  367 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 429  Q
    ||||| |||||| |||||||| | ||||||||||||  |||||||||| |||||||| |||||    
T  28297571 atggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccat 28297633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 429
Target Start/End: Complemental strand, 28325806 - 28325744
Alignment:
Q  367 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 429  Q
    ||||| ||| || |||||||| | |||||||||||| ||||||||||| |||||||| |||||    
T  28325806 atggtggcctgagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat 28325744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 429
Target Start/End: Complemental strand, 28514502 - 28514440
Alignment:
Q  367 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 429  Q
    ||||| |||||| |||||||| | ||||||||||||  |||||||||| |||||||| |||||    
T  28514502 atggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccat 28514440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 161
Target Start/End: Complemental strand, 25539132 - 25539095
Alignment:
Q  124 cttgtattcatatctattcatgcccaacaagataagtt 161  Q
    |||||||||||||||||||||| |||| ||||||||||    
T  25539132 cttgtattcatatctattcatgtccaataagataagtt 25539095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 27592598 - 27592651
Alignment:
Q  108 ctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagtt 161  Q
    ||||||| |||  |||||||||||||||||||||||||  ||| ||||||||||    
T  27592598 ctatctttccaataagcttgtattcatatctattcatgtgcaataagataagtt 27592651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 27604281 - 27604334
Alignment:
Q  108 ctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagtt 161  Q
    ||||||| |||  ||||| ||||||||||||||||||| |||| ||||||||||    
T  27604281 ctatctttccaataagctcgtattcatatctattcatgtccaataagataagtt 27604334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 27677197 - 27677250
Alignment:
Q  108 ctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagtt 161  Q
    ||||||| |||  |||||||||||||||||||||||||  ||| ||||||||||    
T  27677197 ctatctttccaataagcttgtattcatatctattcatgtgcaataagataagtt 27677250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 27679555 - 27679502
Alignment:
Q  108 ctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagtt 161  Q
    ||||||| |||  |||||||||||||||||||||||||  ||| ||||||||||    
T  27679555 ctatctttccaataagcttgtattcatatctattcatgtgcaataagataagtt 27679502  T

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Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 27705981 - 27706034
Alignment:
Q  108 ctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagtt 161  Q
    ||||||| |||  |||||||||||||||||||||||||  ||| ||||||||||    
T  27705981 ctatctttccaataagcttgtattcatatctattcatgtgcaataagataagtt 27706034  T

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Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 413
Target Start/End: Complemental strand, 25580038 - 25580002
Alignment:
Q  377 gacaagttagctgcttgagtaagagctatcttccatt 413  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  25580038 gacaagttagcagcttgggtaagagctatcttccatt 25580002  T

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Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 413
Target Start/End: Complemental strand, 26056245 - 26056209
Alignment:
Q  377 gacaagttagctgcttgagtaagagctatcttccatt 413  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  26056245 gacaagttagcagcttgagtaagagccatcttccatt 26056209  T

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Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 413
Target Start/End: Complemental strand, 26076215 - 26076179
Alignment:
Q  377 gacaagttagctgcttgagtaagagctatcttccatt 413  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  26076215 gacaagttagcagcttgagtaagagccatcttccatt 26076179  T

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Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 467
Target Start/End: Original strand, 27337923 - 27338023
Alignment:
Q  367 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 466  Q
    ||||| ||| || |||||||| ||||| |||||||| ||||||||||| | |||||| ||||| |  ||  | |||| ||||||| | ||||||||||||    
T  27337923 atggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttcatgctta 27338022  T
Q  467 g 467  Q
    |    
T  27338023 g 27338023  T

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Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 467
Target Start/End: Original strand, 27398663 - 27398763
Alignment:
Q  367 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 466  Q
    ||||| ||| || |||||||| ||||| |||||||| ||||||||||| | |||||| ||||| |  ||  | |||| ||||||| | ||||||||||||    
T  27398663 atggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttcatgctta 27398762  T
Q  467 g 467  Q
    |    
T  27398763 g 27398763  T

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Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 419
Target Start/End: Original strand, 28098215 - 28098267
Alignment:
Q  367 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgca 419  Q
    ||||| ||| |||||||||||||||||  ||||||| ||||||||||| ||||    
T  28098215 atggtggccggacaagttagctgcttggttaagagccatcttccatttatgca 28098267  T

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Target: scaffold0038 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 429
Target Start/End: Complemental strand, 35054 - 34992
Alignment:
Q  367 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 429  Q
    ||||| |||||| ||||||| || |||||||||||| ||||||||||| |||||||| |||||    
T  35054 atggtggccagaaaagttagatgtttgagtaagagccatcttccatttctgcaacctctccat 34992  T

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Target: scaffold0038; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 368 - 429
Target Start/End: Complemental strand, 27776 - 27715
Alignment:
Q  368 tggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 429  Q
    |||| |||||| |||||||| | |||||||||||| ||||||||||| |||||||| |||||    
T  27776 tggtggccagagaagttagcagtttgagtaagagcaatcttccatttctgcaacctatccat 27715  T

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Target: scaffold0038; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 429
Target Start/End: Complemental strand, 117121 - 117059
Alignment:
Q  367 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 429  Q
    ||||| ||| || |||||||| | |||||||||||| ||||||||||| |||||||| |||||    
T  117121 atggtggcctgagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat 117059  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 324 - 413
Target Start/End: Original strand, 28127481 - 28127570
Alignment:
Q  324 aggcaaaacaagattgaagtgaagtaggctacccaggagaacgatggtcgccagacaagttagctgcttgagtaagagctatcttccatt 413  Q
    ||||||||||||||| ||||  |||||| ||||| |||  |  ||||| ||| ||||||||||| ||||| || ||||||||||||||||    
T  28127481 aggcaaaacaagatttaagtatagtagggtaccctggactataatggtagccggacaagttagcagcttgggttagagctatcttccatt 28127570  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 423
Target Start/End: Complemental strand, 3280032 - 3279976
Alignment:
Q  367 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacct 423  Q
    ||||| ||| |||||||||||||||||  ||||||| ||||||||||| ||||||||    
T  3280032 atggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacct 3279976  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 436
Target Start/End: Original strand, 5090806 - 5090875
Alignment:
Q  367 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatct 436  Q
    ||||| ||||||||| |||||||||||  ||||||| |||| |||||| |||||| | ||||||| ||||    
T  5090806 atggtagccagacaaattagctgcttgcttaagagccatctcccatttctgcaacttctccatattatct 5090875  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 18679149 - 18679185
Alignment:
Q  124 cttgtattcatatctattcatgcccaacaagataagt 160  Q
    |||||||||||||||||||||| |||| |||||||||    
T  18679149 cttgtattcatatctattcatgtccaataagataagt 18679185  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 18723674 - 18723710
Alignment:
Q  124 cttgtattcatatctattcatgcccaacaagataagt 160  Q
    |||||||||||||||||||||| |||| |||||||||    
T  18723674 cttgtattcatatctattcatgtccaataagataagt 18723710  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 18731093 - 18731129
Alignment:
Q  124 cttgtattcatatctattcatgcccaacaagataagt 160  Q
    |||||||||||||||||||||| |||| |||||||||    
T  18731093 cttgtattcatatctattcatgtccaataagataagt 18731129  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 423
Target Start/End: Original strand, 58140 - 58196
Alignment:
Q  367 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacct 423  Q
    ||||| |||||| |||||||| |  |||||||||||| |||||||||| ||||||||    
T  58140 atggtggccagagaagttagcagtctgagtaagagctgtcttccatttctgcaacct 58196  T

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