View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2640_low_12 (Length: 489)
Name: NF2640_low_12
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2640_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 451; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 15 - 477
Target Start/End: Original strand, 29643348 - 29643810
Alignment:
| Q |
15 |
gatgatgtctctcttggatttctttgaaagtgttgactaatagagtttgataccgattcattggctattatggatcaaatgtactcttcttattaattta |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29643348 |
gatgatgtctctcttggatttctttgaaagtgttgactaatagagtttgataccgattcattggctattatggatcaaatgtactcttcttattaattta |
29643447 |
T |
|
| Q |
115 |
gtttcttttggttgttccccaaagttttgttgattggtaattctctaccaatctttgtattatttctgctaattccagtaagcttagcatcaagagaata |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29643448 |
gtttcttttggttgttccccaaagttttgttgattggtaattctctaccaatctttgaattatttctgctaattccagtaagctcagcatcaagagaata |
29643547 |
T |
|
| Q |
215 |
taacatggcttctacttctaaagatttctattgaaacatttcccttctcaagttgttaaaacactgtataatgtgaaaagtaaatatgctctcatttaat |
314 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29643548 |
taacatggcttctacttctaaagatttctattgaaaaatttcccttctcaagttgttaaaacactgtataatgtgaaaagtaaatatgctctcatttaat |
29643647 |
T |
|
| Q |
315 |
atcttaagtcttaacagcttctgcaatttttgaagttaatgagaatgaactgagtcactctgatcttagtgatgtaaatcaaaaccattataggcctaca |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29643648 |
atcttaagtcttaacagcttctgcaatttttgaagttaatgagaatgaactgagtcactctgatcttagtgatgtaaatcaaaaccattataggcctaca |
29643747 |
T |
|
| Q |
415 |
aatatatcaatctgtgtttgtcttgtttcttttccaacgtaagattgctatatgtttaatatt |
477 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29643748 |
aatatatcaatctgtgtttgtcttgtttcttttccaacgtaagattgctatatgtttaatatt |
29643810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 22 - 321
Target Start/End: Original strand, 29648579 - 29648873
Alignment:
| Q |
22 |
tctctcttggatttctttgaaagtgttgactaatagagtttgataccgattcattggctattatggatcaaatgtactcttcttattaatttagtttctt |
121 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||| ||| |||||||||||||||||||||||||| |||| |
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| T |
29648579 |
tctctcttggatttttttgaaagtgttgactaatagagtttaataccgactcattggctat---gga--aaatgtactcttcttattaatttagtgtctt |
29648673 |
T |
|
| Q |
122 |
ttggttgttccccaaagttttgttgattggtaattctctaccaatctttgtattatttctgctaattccagtaagcttagcatcaagagaatataacatg |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
29648674 |
ttggttgttccccaaagttttgttgattggtaattctctaccaatctttgaattatttctgctaattccagtaagctcagcatcaagagaatataacatg |
29648773 |
T |
|
| Q |
222 |
gcttctacttctaaagatttctattgaaacatttcccttctcaagttgttaaaacactgtataatgtgaaaagtaaatatgctctcatttaatatcttaa |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
29648774 |
gcttctacttctaaagatttctattgaaacatttgccttctcaagttgttaaaacactgtataatgtgaaaagtacatatgctctcatttaatatcttaa |
29648873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 29596719 - 29596505
Alignment:
| Q |
17 |
tgatgtctctcttggatttctttgaaagtgttgactaatagagtttgataccgattcattggctattatggat-caaatgtactcttcttattaatttag |
115 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||||| ||| || | |||||| ||||||| |||||||||| ||| |||||||||| |
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|
| T |
29596719 |
tgatgtctcttttggatttctttgaaagtgttgactaattgagtttaatattgacttattggc---tatggataaaaatgtactcctctcattaatttag |
29596623 |
T |
|
| Q |
116 |
tttcttttggttgttccccaaagttttgttgattggtaattctctaccaatctttgtattatttctgctaattccagtaagcttagcatcaagagaatat |
215 |
Q |
| |
|
| ||||||||| |||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||| ||| ||||| | |||||||||||||| |
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| T |
29596622 |
tgacttttggttattccccaatgttttgttgattggtaattctctatcaatctttgaattatttctgctaatttcagaaagctaaacatcaagagaatat |
29596523 |
T |
|
| Q |
216 |
aacatggcttctacttct |
233 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
29596522 |
aacatggtttctacttct |
29596505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 373 - 477
Target Start/End: Original strand, 29649660 - 29649764
Alignment:
| Q |
373 |
tctgatcttagtgatgtaaatcaaaaccattataggcctacaaatatatcaatctgtgtttgtcttgtttcttttccaacgtaagattgctatatgttta |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
29649660 |
tctgatcttagtgatgtaaatcaaaaccattataggcatacaaatatattaaactgtgtttgtcttgtttctttttcaatataagattgctatatgttta |
29649759 |
T |
|
| Q |
473 |
atatt |
477 |
Q |
| |
|
||||| |
|
|
| T |
29649760 |
atatt |
29649764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 133 - 241
Target Start/End: Original strand, 19820162 - 19820270
Alignment:
| Q |
133 |
ccaaagttttgttgattggtaattctctaccaatctttgtattatttctgctaattccagtaagcttagcatcaagagaatataacatggcttctacttc |
232 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||| ||| |||||| |||||||||||||||| |||||||||||||| |
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| T |
19820162 |
ccaaagttttgttgattggtaattccctatcaatctttgaattatttctgctaatttcagcaagcttggcatcaagagaatatatcatggcttctacttg |
19820261 |
T |
|
| Q |
233 |
taaagattt |
241 |
Q |
| |
|
||||||||| |
|
|
| T |
19820262 |
taaagattt |
19820270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 105 - 237
Target Start/End: Complemental strand, 24254055 - 24253923
Alignment:
| Q |
105 |
tattaatttagtttcttttggttgttccccaaagttttgttgattggtaattctctaccaatctttgtattatttctgctaattccagtaagcttagcat |
204 |
Q |
| |
|
|||||||||| | || | ||||| | |||||||||||||||||||| |||||| ||| ||| ||||| ||| |||| || |||| ||| ||| || |||| |
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|
| T |
24254055 |
tattaatttactatcatatggttttcccccaaagttttgttgattgataattccctatcaaactttgaattctttcagcaaatttcagcaagatttgcat |
24253956 |
T |
|
| Q |
205 |
caagagaatataacatggcttctacttctaaag |
237 |
Q |
| |
|
||| | || ||||||||||||||| ||| |||| |
|
|
| T |
24253955 |
caataaaacataacatggcttctatttccaaag |
24253923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 105 - 241
Target Start/End: Complemental strand, 20863755 - 20863619
Alignment:
| Q |
105 |
tattaatttagtttcttttggttgttccccaaagttttgttgattggtaattctctaccaatctttgtattatttctgctaattccagtaagcttagcat |
204 |
Q |
| |
|
|||||||||| | || | ||||| | |||||||||||| ||||||||| |||| ||| ||||||||| ||| ||||||| |||| ||| ||| || |||| |
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|
| T |
20863755 |
tattaatttactatcatatggttttcccccaaagttttcttgattggtgattccctatcaatctttgaattctttctgcaaatttcagcaagatttgcat |
20863656 |
T |
|
| Q |
205 |
caagagaatataacatggcttctacttctaaagattt |
241 |
Q |
| |
|
|| |||| ||||||||| | |||||| |||||||| |
|
|
| T |
20863655 |
gaatagaaaataacatggtatttacttccaaagattt |
20863619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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