View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2640_low_15 (Length: 477)
Name: NF2640_low_15
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2640_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 92 - 194
Target Start/End: Complemental strand, 26112646 - 26112544
Alignment:
| Q |
92 |
ccagcatttgaagctcaaccgtttgtatatattacttccaacaaaatagggaacaaacatcaataaaagctcaactgtttggatttatacggagtaaaat |
191 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| | ||||||||||||| ||||||||||||||| |||||||| |
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| T |
26112646 |
ccagcatttgaagctcaaccgtttgtatatatcacttccaacaaaatagggaataaacagccataaaagctcaaccgtttggatttatacgcagtaaaat |
26112547 |
T |
|
| Q |
192 |
cat |
194 |
Q |
| |
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||| |
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|
| T |
26112546 |
cat |
26112544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 26112720 - 26112677
Alignment:
| Q |
18 |
gtgagcatataccattccccaataaaacaaaaataataattcca |
61 |
Q |
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|||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
26112720 |
gtgagcatataccattttccaattaaacaaaaataataattcca |
26112677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 92 - 194
Target Start/End: Original strand, 12093051 - 12093153
Alignment:
| Q |
92 |
ccagcatttgaagctcaaccgtttgtatatattacttccaacaaaatagggaacaaacatcaataaaagctcaactgtttggatttatacggagtaaaat |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| | ||||||||||||| ||||||||||||||| |||||||| |
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|
| T |
12093051 |
ccagcatttgaagctcaaccgtttgtatatatcacttccaacaaaatagggaataaacaaccataaaagctcaaccgtttggatttatacgcagtaaaat |
12093150 |
T |
|
| Q |
192 |
cat |
194 |
Q |
| |
|
||| |
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|
| T |
12093151 |
cat |
12093153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 12092979 - 12093022
Alignment:
| Q |
18 |
gtgagcatataccattccccaataaaacaaaaataataattcca |
61 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||| |
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|
| T |
12092979 |
gtgagcatataccattttccaattaaacaaaaataataattcca |
12093022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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