View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2640_low_16 (Length: 474)
Name: NF2640_low_16
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2640_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 16 - 457
Target Start/End: Original strand, 6734572 - 6735013
Alignment:
| Q |
16 |
atgaagcaccagttgtggacatccctccagttgtgagtcctaccacagatgaaacaccagaagaacttccacaaccagaagctgaagtgccacttccacc |
115 |
Q |
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| T |
6734572 |
atgaagcaccagttgtggacatccctccagttgtgagtcctaccacagatgaaacaccagaagaacttccacaaccagaagctgaagtgccacttccacc |
6734671 |
T |
|
| Q |
116 |
gccagaaactgaggtgccactcccagctgttcctaatgcaacgccggttacagcaaagcctacagcgaaagagccttcgttttctttcttcatgcatgat |
215 |
Q |
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| T |
6734672 |
gccagaagctgaggtaccactcccagctgttcctaatgcaacgccggttacagcaaagcctatagcaaaagagccgtcgttttctttcttcatgcatgat |
6734771 |
T |
|
| Q |
216 |
atccttggtggatcacatccatcagcaagagtagtagcaggaattgtagcaaacagtgatgtaaccggcttaccattctccaagctcaacaacaatctct |
315 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6734772 |
atccttggtggatcacatccatcagcaagagtggtagcaggaattgtagcaaacagtgatgtaaccggcttaccattctccaagctcaacaacaatctct |
6734871 |
T |
|
| Q |
316 |
tccctattactggaggaattccattagttaaccctaaactcaatggcattgtcacaaacaacaatctcccaaaccttgtaggtctcagtgctgctcaatc |
415 |
Q |
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| T |
6734872 |
tccctattactggaggaattccattagttaaccctaaactcaatggcattgtcacaaacaacaatctcccaaaccttgtaggtctcagtgctgctcaatc |
6734971 |
T |
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| Q |
416 |
ctcgactgtgttcaaaaacagtggcacaagtaacactgtttc |
457 |
Q |
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| T |
6734972 |
ctcgactgtattcaaaaacagtggcacaagtaacactgtttc |
6735013 |
T |
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Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 201 - 379
Target Start/End: Complemental strand, 52200288 - 52200110
Alignment:
| Q |
201 |
ttcttcatgcatgatatccttggtggatcacatccatcagcaagagtagtagcaggaattgtagcaaacagtgatgtaaccggcttaccattctccaagc |
300 |
Q |
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||||||||||||||||| || ||||| ||||| |||||||||||||||||| | ||||| |||||||||||||||||||| |||||||| |||||||| |
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| T |
52200288 |
ttcttcatgcatgatatactaggtgggtcacacccatcagcaagagtagtaaccggaatagtagcaaacagtgatgtaacaggcttacccttctccaaaa |
52200189 |
T |
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| Q |
301 |
tcaacaacaatctcttccctattactggaggaattccattagttaaccctaaactcaatggcattgtcacaaacaacaa |
379 |
Q |
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||||||||| ||||||| || || |||||||| || ||||| | ||| || ||||||||||| ||||||||||||| |
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| T |
52200188 |
acaacaacaacatcttcccaatcacaggaggaatacccttagtcatccccaagctcaatggcatcatcacaaacaacaa |
52200110 |
T |
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