View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2640_low_20 (Length: 436)
Name: NF2640_low_20
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2640_low_20 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 16 - 436
Target Start/End: Complemental strand, 43410476 - 43410059
Alignment:
| Q |
16 |
catgatcaactcctaaaggagctcctgtagggttttctgtcatcacaacatgatgatggttaatggcagtagtagtagtcataggtaatttgtttcctgc |
115 |
Q |
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| T |
43410476 |
catgatcaactcctaaaggagctcctgtagggttttctgtcatcacaacatgatgatggttaatggcagtagtagtagtcataggtaatttgtttcctgc |
43410377 |
T |
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| Q |
116 |
atgggtctgactgcaagcagagggtggggatttcaaactagtaactattccatctccatggttattattatagaagctattgttgttgttgttatcatta |
215 |
Q |
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| T |
43410376 |
atgggtctgactgcaagcagagggtggggatttcaaactagtaactattccatctccatggttattattatagaagctattgttgctgtt---atcatta |
43410280 |
T |
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| Q |
216 |
ccatcaccaccattagcagttgcagtgctcaactctgggaagctggcatagaaagagccaatctgtatggcaccctctgcaccttgaacagaatcaatca |
315 |
Q |
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| T |
43410279 |
ccatcaccaccattagcagttgcattgctcaactctgggaagctggcatagaaagagccaatctgtatggcaccctctgcaccttgaacagaatcaatca |
43410180 |
T |
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| Q |
316 |
caagttgtagcttctttaaagagtggcccactttctttatttttcttgaaggccatcttgtaatcccatgctgtctgcatatccttttcagagttgtagg |
415 |
Q |
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| T |
43410179 |
caagttgtagcttctttaaagagtggcccaccttctttatttttcttgaaggccatcttgtaatcccatgctgtctgcatatccttttcagagttgtagg |
43410080 |
T |
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| Q |
416 |
acacactgtatcacaaaatta |
436 |
Q |
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| T |
43410079 |
acacactgtatcacaaaatta |
43410059 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 424
Target Start/End: Complemental strand, 25531416 - 25531358
Alignment:
| Q |
366 |
ggccatcttgtaatcccatgctgtctgcatatccttttcagagttgtaggacacactgt |
424 |
Q |
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| T |
25531416 |
ggccatcttgaaattccatgttgtctgcatattctcttcagagttgttggacaaactgt |
25531358 |
T |
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