View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2640_low_26 (Length: 388)
Name: NF2640_low_26
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2640_low_26 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 13 - 388
Target Start/End: Original strand, 16871711 - 16872086
Alignment:
| Q |
13 |
attctgcactaaccatctcaacttctgtactatgtattatactaatattgattctccaatttacacatctataaaaactaatatttttcgagagtacgtt |
112 |
Q |
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| T |
16871711 |
attctgcactaaccatctcaacttatgtactatgtattatactaatattgattctccaatttacacatctataaaaactaatatttttcgagagtacgtt |
16871810 |
T |
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| Q |
113 |
aaacgaataatattatataatttttataactatctgccttcaaaagttgacattgtaacctcacggatggagaacaactgagtagctgacagtgtctaat |
212 |
Q |
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| T |
16871811 |
aaacgaataatattatataatttttataactatctgccttcaaaagttgacattgtaacctcacggatcgagaacaattgagtagctgacagtgtctaat |
16871910 |
T |
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| Q |
213 |
ttcactgatggagaacactggatacatttatggatctaccagtgatgtaatgttctcactgttctttaattttcatgccacaagaaaaaacatgatatca |
312 |
Q |
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| T |
16871911 |
ttcactgatggagaacactggatacatttatggatctaccagtgatgtaatgttctcactgttctttaattttcatgccacaagaaaaaacatgatatca |
16872010 |
T |
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| Q |
313 |
gttaaagtttaatgtcaaaacattataagtatannnnnnnnaaataataatagaacaaggagctatgatgaggggc |
388 |
Q |
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| T |
16872011 |
gttaaagtttaatgtcaaaacattataagtatattttttttaaataataataaaacaaggagctatgatgaggggc |
16872086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 71 - 232
Target Start/End: Complemental strand, 16654586 - 16654430
Alignment:
| Q |
71 |
atttacacatctataaaaactaatatttttcgagagtacgttaaacgaataatattatataatttttataactatctgccttcaaaagttgacattgtaa |
170 |
Q |
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| T |
16654586 |
atttacacatctataaaatcacatatttttcgagagtacgttga-----taatattttataatttttataactttctctcttcaaaagacgacattgtaa |
16654492 |
T |
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| Q |
171 |
cctcacggatggagaacaactgagtagctgacagtgtctaatttcactgatggagaacactg |
232 |
Q |
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| T |
16654491 |
cctcacggatggagaacaactgagtagctgacaatgtctaatttcactgatagagaacactg |
16654430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 276
Target Start/End: Complemental strand, 36286716 - 36286674
Alignment:
| Q |
234 |
atacatttatggatctaccagtgatgtaatgttctcactgttc |
276 |
Q |
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| T |
36286716 |
atacatttgtggatctactagtgatgtaatgttgtcactgttc |
36286674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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