View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2640_low_3 (Length: 867)
Name: NF2640_low_3
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2640_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 37403883 - 37404158
Alignment:
| Q |
1 |
agatcaaataaataaaaatagatgatataagcaatgcaagcattgaatatacaaataactaacatgtcattgtcatgtggggctgggttgattccttctg |
100 |
Q |
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| T |
37403883 |
agatcaaataaatacaaatagatgatataagcaatgcaggcattgaatatacaaataactaacatgtcattgtcatgtggggctgggttgattccttctg |
37403982 |
T |
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| Q |
101 |
ttacataattttaaggtgactagttggctagggtgaaacacaatgaatgatacctctcatgtgataaggtcatcatccattgaaaatgagagagaaagag |
200 |
Q |
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| T |
37403983 |
ttacataattttaaggtgactagttggctagggtgaaacacaatgaatgatacctctcatgtgataagatcatcatccattgaaaatgagagagaaagag |
37404082 |
T |
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| Q |
201 |
agtatacaatgaaatagaaatataaatgagattttaaggatagagatttcagaaacatgagagaacgtggaaaaaa |
276 |
Q |
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| T |
37404083 |
agtatacaatgaaatagaaatataaatgagattttaaggatagagatttcagaaacatgagagaacgtggaaaaaa |
37404158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 593 - 853
Target Start/End: Original strand, 37404491 - 37404753
Alignment:
| Q |
593 |
tcgtattcataagttattttcagtttattattataagtttttcataattgttcataaacatttcatcatta----taggccttatgcttagaggttgcat |
688 |
Q |
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| T |
37404491 |
tcgtattcataagttattttcagtttattattataagtttttcataattgttcataaacatttcgccattacaggcaggccttatgcttagaggttgtat |
37404590 |
T |
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| Q |
689 |
aacatcataaaatattcatcatacctgagactaagtcaaaaggacttatgcttggtttggttccacgttgagttcactagtttagcatcccaatgccaat |
788 |
Q |
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| T |
37404591 |
aacatgataaaatattcatcatacctgagactaagtcaaaaggacttatgct--gtttggttccacgttgagttcactagtttagcatcccaatgccaat |
37404688 |
T |
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| Q |
789 |
ttgaacgtgatattaagaaactacatttccaagcttctgcccaaacgcacgttatatgatatatt |
853 |
Q |
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| T |
37404689 |
ttgaaggtgatattaagaagctacatttccaagcttctgcccaaacgcacgttatatgatatatt |
37404753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 281 - 450
Target Start/End: Original strand, 37404267 - 37404434
Alignment:
| Q |
281 |
gaaaagaaaatgagatttaagggtggagttttagacacatgagagagagatgagaatacattatcataaaatgggaatggatcatctcatgtgacatgat |
380 |
Q |
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| T |
37404267 |
gaaaagaaaatgagatttaagggtggagttttagacacgtgaga--gagatgagaatacattatcataaaatgggaatggatcatctcatgtgacatgat |
37404364 |
T |
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| Q |
381 |
ggtccatcttaaaatgaattaaggagtaggtttcgatctttatattatttcaatttcaatctagtaagga |
450 |
Q |
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| T |
37404365 |
ggtccatcttaaaatgaattaaggaataggtttcgatctttatattatttcaatttcaatcaagtaagga |
37404434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 475 - 530
Target Start/End: Original strand, 37404433 - 37404488
Alignment:
| Q |
475 |
gactagttcaagaagtttgtgtgaattagggtatgtttgaattgatttatttaaaa |
530 |
Q |
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| T |
37404433 |
gactagatcaagaagtttgtgtgaattaaggtatgtttgaattgatttatttaaaa |
37404488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 743 - 841
Target Start/End: Original strand, 11977357 - 11977455
Alignment:
| Q |
743 |
gtttggttccacgttgagttcactagtttagcatcccaatgccaatttgaacgtgatattaagaaactacatttccaagcttctgcccaaacgcacgtt |
841 |
Q |
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| T |
11977357 |
gtttggctccacgttgaatttactaatttcgcatccaaatgccaatttggaagtgatattgagaatctaacttttcaagcttcagcccaaacgtacgtt |
11977455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 743 - 799
Target Start/End: Complemental strand, 49961585 - 49961529
Alignment:
| Q |
743 |
gtttggttccacgttgagttcactagtttagcatcccaatgccaatttgaacgtgat |
799 |
Q |
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| T |
49961585 |
gtttggttccacgttgaatttactgatttcgcgtcccaatgccaatttgaacgtgat |
49961529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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