View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2640_low_30 (Length: 356)

Name: NF2640_low_30
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2640_low_30
NF2640_low_30
[»] chr1 (5 HSPs)
chr1 (12-299)||(31027292-31027587)
chr1 (12-299)||(31034206-31034488)
chr1 (12-298)||(31028347-31028651)
chr1 (12-298)||(31035317-31035621)
chr1 (237-285)||(52896195-52896243)
[»] chr7 (2 HSPs)
chr7 (12-227)||(39787875-39788088)
chr7 (119-284)||(11669924-11670089)
[»] chr5 (1 HSPs)
chr5 (201-298)||(33737739-33737837)
[»] scaffold1176 (1 HSPs)
scaffold1176 (12-139)||(2279-2407)
[»] chr4 (3 HSPs)
chr4 (34-140)||(13506952-13507058)
chr4 (43-140)||(13508194-13508291)
chr4 (73-176)||(33607659-33607763)
[»] scaffold1118 (1 HSPs)
scaffold1118 (15-95)||(2685-2765)
[»] chr2 (1 HSPs)
chr2 (201-284)||(44095438-44095522)


Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 12 - 299
Target Start/End: Complemental strand, 31027587 - 31027292
Alignment:
Q  12 gagatgaagaagtaaaatacagagggatgaagaagatgaaatctcttgtttttagatttcaaaattttgatgtttacggttttttaatt-catccatgtg 110  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31027587 gagatgaagaagaaaaatacagagggatgaagaagatgaaatctcttgtttttagatttcaaaattttgatgtttacggttttttaatttcatccatgtg 31027488  T
Q  111 cacatttacatttttggttttggt------ccctccattgtaggcatttgtcatctcttagtacacataagcctgtttttgccaactcacatctcaccac 204  Q
    ||||||||| ||||||||||||||      ||||||||| |||||| ||||||||||||| ||||||||||| |||||||||||||||||||||| ||||    
T  31027487 cacatttacgtttttggttttggttttggtccctccattctaggcacttgtcatctcttaatacacataagcttgtttttgccaactcacatctcgccac 31027388  T
Q  205 ctgtgactccatttgctatcaaagcatt-ttttaacagaagttaacgggagtgacttaaagcaaacggttaacaagttacaatgatggttttgaag 299  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  31027387 ctgtgactccatttgctatcaaagcatttttttaacagaagttaacgggagtgactaaaagcaaacggttaacaagttgcaatgatggttttgaag 31027292  T

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Target: chr1; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 12 - 299
Target Start/End: Complemental strand, 31034488 - 31034206
Alignment:
Q  12 gagatgaagaagtaaaatacagagggatgaagaagatgaaatctcttgtttttagatttcaaaattttgatgtttacggttttttaatt-catccatgtg 110  Q
    |||||||| ||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||    
T  31034488 gagatgaacaagaaaaa-acagacggatgaagaagatgaaatctcttgtttttagatttcaaaattttgatgtttacggttttttaatttcatccttctg 31034390  T
Q  111 cacatttacatttttggttttggtccctccattgtaggcatttgtcatctcttagtacacataagcctgtttttgccaactcacatctcaccacctgtga 210  Q
    ||||||||| ||||||||||||||||||||||| |||  | |||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||    
T  31034389 cacatttacgtttttggttttggtccctccattctagcgacttgtcatctcttagtacacataagcctgtttttgccaactcacatctcgcaaactgtga 31034290  T
Q  211 ctccatttgctatcaaagcattttt-taacagaagttaacgggagtgacttaaagcaaacggttaacaagttacaatgatggttttgaag 299  Q
    ||||||||| ||||||||||||||| |||||||||||| |||||||||||      |||||||||| || ||||||||||||||||||||    
T  31034289 ctccatttgttatcaaagcatttttgtaacagaagttagcgggagtgact------aaacggttaagaaattacaatgatggttttgaag 31034206  T

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Target: chr1; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 12 - 298
Target Start/End: Original strand, 31028347 - 31028651
Alignment:
Q  12 gagatgaagaagtaaaatacagagggatgaagaagatgaaatctcttgtttttagatttcaaaattttgatgtttacggtttttt--------------- 96  Q
    |||||||||||| |||| ||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||                   
T  31028347 gagatgaagaagaaaaaaacaaaaggatgaagaagatgaaatctcttgtttttagatttcaaa-ttttgatgtttaaggttttttttttttttttttttt 31028445  T
Q  97 ---aattcatccatgtgcacatttacatttttggttttggtccctccattgtaggcatttgtcatctcttagtacacataagcctgtttttgccaactca 193  Q
       | ||||||| | ||||||||| |||||||||||||||||| ||| || ||| ||  |||||||||| ||||||||||||||||||||| ||||||||    
T  31028446 ttaatttcatccctctgcacatttgcatttttggttttggtccatccgttttagccacgtgtcatctctaagtacacataagcctgtttttaccaactca 31028545  T
Q  194 catctcaccacctgtgactccatttgctatcaaagcattttt-taacagaagttaacgggagtgacttaaagcaaacggttaacaagttacaatgatggt 292  Q
    ||| ||||||| || | |||  ||||  | |||||||||||| |||| ||||||||| |||| || | ||||||||||||||||||||||||| ||||||    
T  31028546 catttcaccacgtgcggctctgtttgtcaacaaagcatttttgtaacggaagttaaccggagggattaaaagcaaacggttaacaagttacaaggatggt 31028645  T
Q  293 tttgaa 298  Q
    ||||||    
T  31028646 tttgaa 31028651  T

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Target: chr1; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 12 - 298
Target Start/End: Original strand, 31035317 - 31035621
Alignment:
Q  12 gagatgaagaagtaaaatacagagggatgaagaagatgaaatctcttgtttttagatttcaaaattttgatgtttacggtttttt--------------- 96  Q
    |||||||||||| |||| ||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||                   
T  31035317 gagatgaagaagaaaaaaacaaaaggatgaagaagatgaaatctcttgtttttagatttcaaa-ttttgatgtttaaggttttttttttttttttttttt 31035415  T
Q  97 ---aattcatccatgtgcacatttacatttttggttttggtccctccattgtaggcatttgtcatctcttagtacacataagcctgtttttgccaactca 193  Q
       | ||||||| | ||||||||| |||||||||||||||||| ||| || ||| ||  |||||||||| ||||||||||||||||||||| ||||||||    
T  31035416 ttaatttcatccctctgcacatttgcatttttggttttggtccatccgttttagccacgtgtcatctctaagtacacataagcctgtttttaccaactca 31035515  T
Q  194 catctcaccacctgtgactccatttgctatcaaagcattttt-taacagaagttaacgggagtgacttaaagcaaacggttaacaagttacaatgatggt 292  Q
    ||| ||||||| || | |||  ||||  | |||||||||||| |||| ||||||||| |||| || | ||||||||||||||||||||||||| ||||||    
T  31035516 catttcaccacgtgcggctctgtttgtcaacaaagcatttttgtaacggaagttaaccggagggattaaaagcaaacggttaacaagttacaaggatggt 31035615  T
Q  293 tttgaa 298  Q
    ||||||    
T  31035616 tttgaa 31035621  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 285
Target Start/End: Complemental strand, 52896243 - 52896195
Alignment:
Q  237 aacagaagttaacgggagtgacttaaagcaaacggttaacaagttacaa 285  Q
    ||||||||||||||| || |||| || ||||| ||||||||||||||||    
T  52896243 aacagaagttaacggaagggactaaaggcaaagggttaacaagttacaa 52896195  T

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Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 12 - 227
Target Start/End: Original strand, 39787875 - 39788088
Alignment:
Q  12 gagatgaagaagtaaaatacagagggatgaagaagatgaaatctcttgtttttagatttcaaaattttgatgtttacggttttttaatt-catccatgtg 110  Q
    |||||||||||| |||| |||||||||||||||||||||| |||||||| |||| |||||||| |||  ||||||||| |||||||||| ||||| ||||    
T  39787875 gagatgaagaagaaaaa-acagagggatgaagaagatgaa-tctcttgtctttaaatttcaaa-tttacatgtttacgtttttttaatttcatccctgtg 39787971  T
Q  111 cacatttacatttttggttttggtccctccattgtaggcatttgtcatctcttagtacacataagcctgtttttgccaactcacatctcaccacctgtga 210  Q
    ||||||||| ||||||||||||||||||||||| ||  || |||||||||||   || |||||||  || |||||||||||||||  || |||| || ||    
T  39787972 cacatttacgtttttggttttggtccctccattctaaccacttgtcatctctcgatatacataagtttgattttgccaactcacacttcgccacgtgcga 39788071  T
Q  211 ctccatttgctatcaaa 227  Q
    |||||||||| ||||||    
T  39788072 ctccatttgccatcaaa 39788088  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 284
Target Start/End: Complemental strand, 11670089 - 11669924
Alignment:
Q  119 catttttggttttggtccctccattgtaggcatttgtcatctcttagtacacataagcctgtttttgccaactcacatctcaccacctgtgactccattt 218  Q
    ||||||||||||||||||||| | | ||| || || |||||| | ||||||||||||| || ||||||||  |||    |  |||| |||||||||||||    
T  11670089 catttttggttttggtccctcaaatctagtcacttatcatctgtcagtacacataagcgtg-ttttgccatgtcatcgattgccacgtgtgactccattt 11669991  T
Q  219 gctatcaaagcattttt-taacagaagttaacgggagtgacttaaagcaaacggttaacaagttaca 284  Q
    || | ||| || ||||| |||| ||||||||||  || |||| ||| |||| ||||||||| |||||    
T  11669990 gccaacaatgcgtttttgtaacggaagttaacgttagggactaaaatcaaaaggttaacaacttaca 11669924  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 201 - 298
Target Start/End: Complemental strand, 33737837 - 33737739
Alignment:
Q  201 ccacctgtgactccatttgctatcaaagcattttt-taacagaagttaacgggagtgacttaaagcaaacggttaacaagttacaatgatggttttgaa 298  Q
    |||| ||||||||  ||||| | |||||| ||||| |||||||||| || ||||| |||| |||||||| |||||||||||||||| | ||||||||||    
T  33737837 ccacatgtgactctgtttgccagcaaagcgtttttgtaacagaagtcaatgggagggactaaaagcaaaaggttaacaagttacaagggtggttttgaa 33737739  T

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Target: scaffold1176 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 2407 - 2279
Alignment:
Q  12 gagatgaagaagtaaaatacagagggatgaagaagatgaaatctcttgtttttag-atttcaaaattttgatgtttacggttttttaattca-tccatgt 109  Q
    |||||||||||| |||| ||||||  |||||||||||| ||||| | |||||||  |||||||| |||||||||||||| ||||| | |||| ||| | |    
T  2407 gagatgaagaagaaaaa-acagagatatgaagaagatggaatctttagtttttaccatttcaaatttttgatgtttacgttttttcacttcagtccctat 2309  T
Q  110 gcacatttacatttttggttttggtccctc 139  Q
    |||  ||| | |||||||||||||||||||    
T  2308 gcaactttgcgtttttggttttggtccctc 2279  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 140
Target Start/End: Complemental strand, 13507058 - 13506952
Alignment:
Q  34 agggatgaagaagatgaaatctcttgtttttagatttcaaaattttgatgtttacg-gttttttaattcatccatgtgcacatttacatttttggttttg 132  Q
    |||||||||||||||||||  |  |||||||| ||||| ||||||||||||||||| |||||| | ||||||| | ||||| |||   |||||| |||||    
T  13507058 agggatgaagaagatgaaaaataatgtttttaaatttc-aaattttgatgtttacgagtttttaatttcatccctatgcacttttgtgtttttgtttttg 13506960  T
Q  133 gtccctcc 140  Q
    ||||||||    
T  13506959 gtccctcc 13506952  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 140
Target Start/End: Original strand, 13508194 - 13508291
Alignment:
Q  43 gaagatgaaatctcttgtttttagatttcaaaattttgatgtttacg-gttttttaattcatccatgtgcacatttacatttttggttttggtccctcc 140  Q
    ||||||||||  || |||||||| |||| ||| |||||||||||||| |||||||| ||||||||| ||||| ||| | |||| | |||||||||||||    
T  13508194 gaagatgaaaaatcatgtttttaaattttaaa-ttttgatgtttacgagttttttatttcatccatatgcacttttgcgttttcgtttttggtccctcc 13508291  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 176
Target Start/End: Complemental strand, 33607763 - 33607659
Alignment:
Q  73 aaattttgatgtttacggttttttaatt-catccatgtgcacatttacatttttggttttggtccctccattgtaggcatttgtcatctcttagtacaca 171  Q
    ||||||| ||||||||| ||||| |||| ||||| | ||||  ||||| ||||||||||||||||||| | | ||| || |||  |||| | ||||||||    
T  33607763 aaatttttatgtttacgttttttcaatttcatccctctgcaattttacgtttttggttttggtccctcaaatctagtcacttgcgatctgtcagtacaca 33607664  T
Q  172 taagc 176  Q
    |||||    
T  33607663 taagc 33607659  T

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Target: scaffold1118 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1118
Description:

Target: scaffold1118; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 2765 - 2685
Alignment:
Q  15 atgaagaagtaaaatacagagggatgaagaagatgaaatctcttgtttttag-atttcaaaattttgatgtttacggttttt 95  Q
    ||||||||| |||| |||||| || |||||||||||||||| |  ||||||  |||||||| |||||||||||||| |||||    
T  2765 atgaagaagaaaaa-acagagagaagaagaagatgaaatctttaatttttaacatttcaaatttttgatgtttacgtttttt 2685  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 284
Target Start/End: Complemental strand, 44095522 - 44095438
Alignment:
Q  201 ccacctgtgactccatttgctatcaaagcattttt-taacagaagttaacgggagtgacttaaagcaaacggttaacaagttaca 284  Q
    |||| ||||||||||||||| | |||||| ||||| |||| ||||||||||  || |||| ||| |||| ||||||||| |||||    
T  44095522 ccacgtgtgactccatttgccaacaaagcgtttttgtaacggaagttaacgttagggactaaaaccaaaaggttaacaacttaca 44095438  T

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