View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2640_low_36 (Length: 276)
Name: NF2640_low_36
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2640_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 44489196 - 44488947
Alignment:
| Q |
18 |
aaaacaaggcgtatctgatgatgatcggagatggaatcaaccgaacaattatcaccggcaatcacagtgttggtgatggatggacaacttttaattcccc |
117 |
Q |
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| T |
44489196 |
aaaacaaggcgtatctgatgatgatcggagatggaatcaaccgaacaattatcaccggcaatcacagtgttggtgatggatggacaacttttaattcccc |
44489097 |
T |
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| Q |
118 |
aacatttggtaagaaaacaatttttatttcattttcagaaac----tatacatcttttggttaggtctaattcaatccttacaaaatcagcttttacaat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44489096 |
aacatttggtaagaaaacaatttttatttcattttcagaaactatatatacatcttttggttaggtctaattcaatccttacaaaatcagcttttacaat |
44488997 |
T |
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| Q |
214 |
gaagatatattgtcttcatttataaacacattttcagactatatattcttggac |
267 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
44488996 |
gaag----attgtcttcatttataaacacattttcagactatatcttattggac |
44488947 |
T |
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