View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2640_low_37 (Length: 260)

Name: NF2640_low_37

Description: NF2640

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF2640_low_37

[»] chr5 (6 HSPs)

Alignment Details

Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 6)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 130; E-Value: 2e-67

Query Start/End: Original strand, 107 - 260

Target Start/End: Original strand, 29643191 - 29643343

Alignment:

Q	107	cggtgcatcactctcctgtataatacggatcctttttgaattataggtctacaacccaactgcaagcacatcaagagttattgctggattaatggtggta	206	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \| \|\|\|\|\|\|
T	29643191	cggtgcatcactctcctgtataatacggatcctttttgaattataggtctacgacccaactgcaagcacatcaagagttattgctggaatggt-gtggta	29643289	T

Q	207	gatggtggcatgaaaggaaaaaatagttttagaactcattttatataagatagt	260	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	29643290	gatggtggcatgaaaggaaaaaatagttttagaactcattttatataagatagt	29643343	T

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Target: chr5; HSP #2

Raw Score: 96; E-Value: 4e-47

Query Start/End: Original strand, 107 - 260

Target Start/End: Original strand, 29648425 - 29648567

Alignment:

Q	107	cggtgcatcactctcctgtataatacggatcctttttgaattataggtctacaacccaactgcaagcacatcaagagttattgctggattaatggtggta	206	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	29648425	cggtgtatcactctcttgtataatacggatcctttttgaattataggtctacgacccaactgcaagcacatcgagagttat-----------tggtggta	29648513	T

Q	207	gatggtggcatgaaaggaaaaaatagttttagaactcattttatataagatagt	260	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	29648514	gatggtggcatgaaaggaagaaatagttttagaactcattttatataagatagt	29648567	T

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Target: chr5; HSP #3

Raw Score: 88; E-Value: 2e-42

Query Start/End: Original strand, 107 - 260

Target Start/End: Complemental strand, 29820445 - 29820303

Alignment:

Q	107	cggtgcatcactctcctgtataatacggatcctttttgaattataggtctacaacccaactgcaagcacatcaagagttattgctggattaatggtggta	206	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|
T	29820445	cggtgtatcactctcttgtataatacggatcctttttgagttataggtctacgacccaaatgcaagcacatcaagag-----------ttactggtggta	29820357	T

Q	207	gatggtggcatgaaaggaaaaaatagttttagaactcattttatataagatagt	260	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	29820356	gatggtggcatgaaaggaagaaatagttttagaactcattttatataagatagt	29820303	T

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Target: chr5; HSP #4

Raw Score: 50; E-Value: 1e-19

Query Start/End: Original strand, 18 - 67

Target Start/End: Original strand, 29643103 - 29643152

Alignment:

Q	18	gtttctgcacacattttcctttgtcacatttgggctttgtattgtattca	67	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	29643103	gtttctgcacacattttcctttgtcacatttgggctttgtattgtattca	29643152	T

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Target: chr5; HSP #5

Raw Score: 42; E-Value: 0.000000000000006

Query Start/End: Original strand, 120 - 189

Target Start/End: Complemental strand, 29596863 - 29596794

Alignment:

Q	120	tcctgtataatacggatcctttttgaattataggtctacaacccaactgcaagcacatcaagagttattg	189	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|
T	29596863	tcctgtataatccggctcctctttgaattataggccaacaacccaattgcaagcacatcatgagttattg	29596794	T

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Target: chr5; HSP #6

Raw Score: 39; E-Value: 0.0000000000004

Query Start/End: Original strand, 114 - 258

Target Start/End: Complemental strand, 29593455 - 29593313

Alignment:

Q	114	tcactctcctgtataatacggatcctttttgaattataggtctaca-acccaactgcaagcacatcaagagttattgctggattaatggtggtagatggt	212	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \| \|\|\|\|\|\|\| \|\|\| \|
T	29593455	tcactctcctgtataacatggatcctttttgaattataggcagacaggcctaaatgcaagcacatcaagagttattgatgg-tagatggtgg--catgat	29593359	T

Q	213	ggcatgaaaggaaaaaatagttttagaactcattttatataagata	258	Q
		\| \| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	29593358	aggaagaaaggaagaaatagtattattactcattttatataagata	29593313	T

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