View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2640_low_7 (Length: 635)

Name: NF2640_low_7
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2640_low_7
NF2640_low_7
[»] chr7 (2 HSPs)
chr7 (24-627)||(44487977-44488591)
chr7 (144-189)||(44474252-44474297)
[»] chr1 (4 HSPs)
chr1 (31-192)||(24060899-24061060)
chr1 (31-186)||(39451067-39451222)
chr1 (31-186)||(39460454-39460609)
chr1 (31-186)||(39471939-39472094)
[»] scaffold0458 (1 HSPs)
scaffold0458 (31-186)||(12440-12595)


Alignment Details
Target: chr7 (Bit Score: 557; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 24 - 627
Target Start/End: Complemental strand, 44488591 - 44487977
Alignment:
Q  24 ccttacatggacaattcaatatcatcaccgctcaaggacgcactgatccaaaccaaaacacaggcatttccatacacaattgcactgttaaaccagctga 123  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44488591 ccttacatggacaattcaatcccatcaccgctcaaggacgcactgatccaaaccaaaacacaggcatttccattcacaattgcactgttaaaccagctga 44488492  T
Q  124 agatttagctccaagtgttagtactgtgaaaacttaccttgggaggccatggaaagagtattcaagaactgttgttatacagtcttttttggaaaatttg 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44488491 agatttagctccaagtgttagtactgtgaaaacttaccttgggaggccatggaaagagtattcaagaactgttgttatgcagtcttttttggaaaatttg 44488392  T
Q  224 attgaccaagctggttggtccatttggagtggtgattttgcactctctacgttgtattatgcagagtttgataatagaggacctggtgcagacacttcta 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44488391 attgaccaagctggttggtccatttggagtggtgattttgcactctctacgttgtattatgcagagtttgataatagaggacctggtgcagacacttcta 44488292  T
Q  324 atagagttacatggccagggtaccatgtgattaatgctacagatgcttcaaattttacggttgataattttctgcaggggaatgtttggttgcctcaaat 423  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44488291 atagagttacatggccagggtaccatgtgattaatgctacagatgcttcaaattttacggttgacaattttctgcaggggaatgtttggttgcctcaaat 44488192  T
Q  424 gggagttccttatattcgtgaacttacaacttttaattagagaacacaagaggaacgatgaataaaggactacata-----------ttgatgctgattg 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||    
T  44488191 gggagttccttatattcgtgaacttacaacttttaattagagaacacaagaggaacgatgaataaaggactacatattgaggattaattgatgctgattg 44488092  T
Q  513 aagaccaaaattatttgatatatttattctttgctgttgtttttaatatacttcaaaagtttttcaaaaggaagagctgcaggttttatttggtgggtgt 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44488091 aagaccaaaattatttgatatatttattctttgctgttgtttttaatatacttcaaaagtttttcaaaaggaagagctgcaggttttatttggtgggtgt 44487992  T
Q  613 tctgcttcctttgct 627  Q
    |||||||||||||||    
T  44487991 tctgcttcctttgct 44487977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 44474297 - 44474252
Alignment:
Q  144 gtactgtgaaaacttaccttgggaggccatggaaagagtattcaag 189  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||    
T  44474297 gtacagtgaaaacataccttggtaggccatggaaagagtactcaag 44474252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 31 - 192
Target Start/End: Complemental strand, 24061060 - 24060899
Alignment:
Q  31 tggacaattcaatatcatcaccgctcaaggacgcactgatccaaaccaaaacacaggcatttccatacacaattgcactgttaaaccagctgaagattta 130  Q
    |||||||||||||  |||||| |||||||| || ||||||||||| |||||||| || | ||| ||||| |||   ||| |||||||||| || |||||     
T  24061060 tggacaattcaattccatcacagctcaaggtcgaactgatccaaatcaaaacactggaacttctatacaaaatgcaactattaaaccagcagatgatttg 24060961  T
Q  131 gctccaagtgttagtactgtgaaaacttaccttgggaggccatggaaagagtattcaagaac 192  Q
    ||||| |  |||   ||||| ||||| ||||| ||||| ||||||||||| |||||||||||    
T  24060960 gctcctaacgttgcaactgttaaaacatacctagggagaccatggaaagaatattcaagaac 24060899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 31 - 186
Target Start/End: Original strand, 39451067 - 39451222
Alignment:
Q  31 tggacaattcaatatcatcaccgctcaaggacgcactgatccaaaccaaaacacaggcatttccatacacaattgcactgttaaaccagctgaagattta 130  Q
    |||||||||||||  |||||| |||||||| || ||||||||||| |||||||| || | ||| ||||| |||   ||| ||||| |||| || |||||     
T  39451067 tggacaattcaattccatcacagctcaaggtcgaactgatccaaatcaaaacactggaacttctatacaaaatgcaactattaaagcagcagatgatttg 39451166  T
Q  131 gctccaagtgttagtactgtgaaaacttaccttgggaggccatggaaagagtattc 186  Q
    ||||| |  ||| | |||||  |||| ||||||||||| || |||||||| |||||    
T  39451167 gctccgaaagttggaactgtacaaacataccttgggagaccgtggaaagaatattc 39451222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 31 - 186
Target Start/End: Original strand, 39460454 - 39460609
Alignment:
Q  31 tggacaattcaatatcatcaccgctcaaggacgcactgatccaaaccaaaacacaggcatttccatacacaattgcactgttaaaccagctgaagattta 130  Q
    |||||||||||||  |||||| |||||||| || ||||||||||| |||||||| || | ||| ||||| |||   ||| ||||| |||| || |||||     
T  39460454 tggacaattcaattccatcacagctcaaggtcgaactgatccaaatcaaaacactggaacttctatacaaaatgcaactattaaagcagcagatgatttg 39460553  T
Q  131 gctccaagtgttagtactgtgaaaacttaccttgggaggccatggaaagagtattc 186  Q
    ||||| |  ||| | |||||  |||| ||||||||||| || |||||||| |||||    
T  39460554 gctccgaaagttggaactgtacaaacataccttgggagaccgtggaaagaatattc 39460609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 186
Target Start/End: Original strand, 39471939 - 39472094
Alignment:
Q  31 tggacaattcaatatcatcaccgctcaaggacgcactgatccaaaccaaaacacaggcatttccatacacaattgcactgttaaaccagctgaagattta 130  Q
    |||||||||||||  |||||| |||||||| || ||||||||||| |||||||| || | ||| ||||| |||   ||| ||||| |||| || |||||     
T  39471939 tggacaattcaattccatcacagctcaaggtcgaactgatccaaatcaaaacactggaacttctatacaaaatgcaactattaaagcagcagatgatttg 39472038  T
Q  131 gctccaagtgttagtactgtgaaaacttaccttgggaggccatggaaagagtattc 186  Q
    ||||| |  ||| | |||||  |||| ||||| ||||| || |||||||| |||||    
T  39472039 gctccgaaagttggaactgtacaaacatacctagggagaccgtggaaagaatattc 39472094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0458 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0458
Description:

Target: scaffold0458; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 31 - 186
Target Start/End: Complemental strand, 12595 - 12440
Alignment:
Q  31 tggacaattcaatatcatcaccgctcaaggacgcactgatccaaaccaaaacacaggcatttccatacacaattgcactgttaaaccagctgaagattta 130  Q
    |||||||||||||  |||||| |||||||| || ||||||||||| |||||||| || | ||| ||||| |||   ||| ||||| |||| || |||||     
T  12595 tggacaattcaattccatcacagctcaaggtcgaactgatccaaatcaaaacactggaacttctatacaaaatgcaactattaaagcagcagatgatttg 12496  T
Q  131 gctccaagtgttagtactgtgaaaacttaccttgggaggccatggaaagagtattc 186  Q
    ||||| |  ||| | |||||  |||| ||||||||||| || |||||||| |||||    
T  12495 gctccgaaagttggaactgtacaaacataccttgggagaccgtggaaagaatattc 12440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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