View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2640_low_9 (Length: 611)
Name: NF2640_low_9
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2640_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 18 - 447
Target Start/End: Original strand, 36123484 - 36123912
Alignment:
| Q |
18 |
tgctcatgattttgatgttattcatgttgtcctaatgatatcacataagtttgtttgtctaaaataactccactcgctaatggtatcttaataacttaat |
117 |
Q |
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| T |
36123484 |
tgctcatgattttgatgttattcatgatgtcctaatgatatcacataagtttgtttgtctaaaataactccactcgctaatggtatcttaataacttaat |
36123583 |
T |
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| Q |
118 |
aagaacaacagacaacattttctacataaacaaacttgttattaaattattctagatatatcatcccctaaaaaataaattattttagagaagaccaatg |
217 |
Q |
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| T |
36123584 |
aagaacaacagacaacattttctacataaacaaacttgttattaaattattctagatatatcatcccctaaaaaataaattattttagagaagaccaatg |
36123683 |
T |
|
| Q |
218 |
ttatagaagtatcattctcaccaataacaagagaaaacattgtgtaacgaggccactcccaaaatataataataacaactatattgaacaaaatcatatc |
317 |
Q |
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| T |
36123684 |
ttatagaagtatcattctcaccaataacaagagaaaacattgtgtaacgaggccactcccaaaatataataataacaactatattgaacaaaatcatatc |
36123783 |
T |
|
| Q |
318 |
attggaaattaagtccaaacattcttaagccggcctaaccagctcatgccttgcaggacctaagcaggacatgaccttgtcaatgtcacccccacaatgt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36123784 |
attggaaattaagtccaaacattcttaagccggcctaaccagctcatgccttgcaggacctaagcaggacatgaccttgtcaatgtca-ccccacaatgt |
36123882 |
T |
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| Q |
418 |
cttacacatatgttcatttctcaaatgtta |
447 |
Q |
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| T |
36123883 |
cttacacatatgttcatttctcaaatgtta |
36123912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 529 - 601
Target Start/End: Original strand, 36123994 - 36124066
Alignment:
| Q |
529 |
ccatcttaactctaatcatgtttcatgaaagagaattcatctctattatcattctcttcattatagccctttg |
601 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
36123994 |
ccatcttaactctaatcatgtttcatgaaagagaattcatctctattatcattctcttcatgatagccttttg |
36124066 |
T |
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