View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2641_high_20 (Length: 242)
Name: NF2641_high_20
Description: NF2641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2641_high_20 |
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| [»] chr1 (4 HSPs) |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 12 - 242
Target Start/End: Complemental strand, 51458674 - 51458444
Alignment:
| Q |
12 |
agagaaagtaaatggtcatgaggggcatccctataactagataatggaaaattgtctaagccggttctacctgctttaaaggaatgcaattgacatgtct |
111 |
Q |
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|||||| ||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51458674 |
agagaaggtaaatggtcatgaggggcatccatagagctagataatggaaaattgtctaagccggttctacctgctttaaaggaatgcaattgacatgtct |
51458575 |
T |
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| Q |
112 |
gaactctctgaaatgcttctctagatattccttcaatttgggtacatcctctctccgaaaaatatcccagagagcaccttctaagggatcctctccaacc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51458574 |
gaactctctgaaatgcttctctagatattccttcaatttgggtacatcctctctccgaaaaatatcccagagagcaccttctaagggatcctctccaacc |
51458475 |
T |
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| Q |
212 |
atcaggtcatcatcattagtgtcaaagagtt |
242 |
Q |
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|||||||||||||||||||||||| |||||| |
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| T |
51458474 |
atcaggtcatcatcattagtgtcagagagtt |
51458444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 79 - 197
Target Start/End: Original strand, 30204068 - 30204186
Alignment:
| Q |
79 |
tacctgctttaaaggaatgcaattgacatgtctgaactctctgaaatgcttctctagatattccttcaatttgggtacatcctctctccgaaaaatatcc |
178 |
Q |
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|||||||||||||||| ||||| |||||| |||||||||||||||||||||| || |||||| | |||||| ||||||||||||||||||||||||||| |
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| T |
30204068 |
tacctgctttaaaggagagcaatagacatgcctgaactctctgaaatgcttctttaaatattcttccaatttaggtacatcctctctccgaaaaatatcc |
30204167 |
T |
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| Q |
179 |
cagagagcaccttctaagg |
197 |
Q |
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| T |
30204168 |
cagagagcaccatctaagg |
30204186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 79 - 195
Target Start/End: Complemental strand, 51483175 - 51483059
Alignment:
| Q |
79 |
tacctgctttaaaggaatgcaattgacatgtctgaactctctgaaatgcttctctagatattccttcaatttgggtacatcctctctccgaaaaatatcc |
178 |
Q |
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|||||||||||||||| ||||| |||||| ||||||||| |||||||||||| || |||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
51483175 |
tacctgctttaaaggagagcaatggacatgcctgaactctttgaaatgcttctttaaatattcctccaattcaggtacatcctctctccgaaaaatatcc |
51483076 |
T |
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| Q |
179 |
cagagagcaccttctaa |
195 |
Q |
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| T |
51483075 |
caaagagcaccatctaa |
51483059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 79 - 195
Target Start/End: Complemental strand, 51500012 - 51499896
Alignment:
| Q |
79 |
tacctgctttaaaggaatgcaattgacatgtctgaactctctgaaatgcttctctagatattccttcaatttgggtacatcctctctccgaaaaatatcc |
178 |
Q |
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|||||||||||||||| | | | |||||| |||||||||||||||||||||| || |||||||| ||| || || |||||||||||||||||||||||| |
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| T |
51500012 |
tacctgctttaaaggagaggagtggacatgcctgaactctctgaaatgcttctttaaatattcctccaacttaggaacatcctctctccgaaaaatatcc |
51499913 |
T |
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| Q |
179 |
cagagagcaccttctaa |
195 |
Q |
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| T |
51499912 |
cagagagcaccgtctaa |
51499896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 8e-82; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 9 - 234
Target Start/End: Complemental strand, 43162947 - 43162722
Alignment:
| Q |
9 |
agcagagaaagtaaatggtcatgaggggcatccctataactagataatggaaaattgtctaagccggttctacctgctttaaaggaatgcaattgacatg |
108 |
Q |
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||||||||||||||||| ||| ||||||||||| || | ||||||||||||||||||||||||| | || |||||||||||||||| ||||||||||||| |
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| T |
43162947 |
agcagagaaagtaaatgatcacgaggggcatccatagagctagataatggaaaattgtctaagctgattttacctgctttaaaggactgcaattgacatg |
43162848 |
T |
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| Q |
109 |
tctgaactctctgaaatgcttctctagatattccttcaatttgggtacatcctctctccgaaaaatatcccagagagcaccttctaagggatcctctcca |
208 |
Q |
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||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
43162847 |
tctgaactctctgaaatgcttttttatatattccttcaatttgggtacatcctctctccgaaaaatatcccagagagcaccttctaaggggtcccctcca |
43162748 |
T |
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| Q |
209 |
accatcaggtcatcatcattagtgtc |
234 |
Q |
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|||| || |||| |||||||||||| |
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| T |
43162747 |
accaccaagtcactatcattagtgtc |
43162722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 79 - 199
Target Start/End: Complemental strand, 27398647 - 27398527
Alignment:
| Q |
79 |
tacctgctttaaaggaatgcaattgacatgtctgaactctctgaaatgcttctctagatattccttcaatttgggtacatcctctctccgaaaaatatcc |
178 |
Q |
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||||| || ||||||| ||||| |||||| |||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
27398647 |
tacctcctctaaaggagagcaatggacatgcctgaactctctgaaatgcttcttcagatattcctgcaatgcaggtacatcctctctccgaaaaatatcc |
27398548 |
T |
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| Q |
179 |
cagagagcaccttctaaggga |
199 |
Q |
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|| |||||||| ||||||||| |
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| T |
27398547 |
caaagagcaccatctaaggga |
27398527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 79 - 195
Target Start/End: Original strand, 20866760 - 20866876
Alignment:
| Q |
79 |
tacctgctttaaaggaatgcaattgacatgtctgaactctctgaaatgcttctctagatattccttcaatttgggtacatcctctctccgaaaaatatcc |
178 |
Q |
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|||||||||||||||| |||| || ||| |||||||||| ||||||||| ||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
20866760 |
tacctgctttaaaggagaacaatagatatgcctgaactctccagaatgcttcttcagatattccttcaatttcggcacatcctctctccgaaaaatatcc |
20866859 |
T |
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| Q |
179 |
cagagagcaccttctaa |
195 |
Q |
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||| ||||||| ||||| |
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| T |
20866860 |
cagtgagcaccatctaa |
20866876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 79 - 195
Target Start/End: Original strand, 135504 - 135620
Alignment:
| Q |
79 |
tacctgctttaaaggaatgcaattgacatgtctgaactctctgaaatgcttctctagatattccttcaatttgggtacatcctctctccgaaaaatatcc |
178 |
Q |
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|||||||||||||||| ||||| || ||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
135504 |
tacctgctttaaaggagagcaatagatatgcctgaactctctgaaatgcttcatcagatattccttcaatttaggtacatcctctctccgaaaaatatcc |
135603 |
T |
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| Q |
179 |
cagagagcaccttctaa |
195 |
Q |
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||||||||||| ||||| |
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| T |
135604 |
cagagagcaccatctaa |
135620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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