View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2641_high_6 (Length: 443)
Name: NF2641_high_6
Description: NF2641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2641_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 17 - 433
Target Start/End: Original strand, 6282560 - 6282975
Alignment:
| Q |
17 |
agttgggagaagagcataattcttttaagatacttgttgaacaatcatatttaattgctcacctgtagaaaacactcaatattttgaacacaaagggccc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6282560 |
agttgggagaagagcataattcttttaagatacttgttgaacaatcatatttaattgctcacctgtagaaaacactcaatattttgaacacaaagggccc |
6282659 |
T |
|
| Q |
117 |
gattaaaagttggggcatttctctcttcaaaatatatttaatcaaattgcacacggataaggacaatattactagacacttttttcttttcaagtgataa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
6282660 |
gattaaaagttggggcatttctctcttcaaaatatatttaatcaaattgcacacggaaaaggacaatattactagacacttttttcttttcaagtgataa |
6282759 |
T |
|
| Q |
217 |
tctttatgaacgtaagcnnnnnnnnnnnnctatcccttttagccgtggaatcacatgcaaggctcggggtgatgccatatatccataaagtttgctagcc |
316 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6282760 |
tctttatgaacgtaagc-tttttttttttctatcccttttagccgtggaatcacatgcaaggctcggggtgatgccatatatccataaagtttgctagcc |
6282858 |
T |
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| Q |
317 |
aaagtgaaaagcttcaacacaagtgttgcttactcgccttttcccgatcaacagtgaactcaaaattacatgctagctgttcaacacctaaacatattta |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6282859 |
aaagtgaaaagcttcaacacaagtgttgcttactcgccttttcccgatcaacagtgaactcaaaattacatgctagctgttcaacacctaaacatattta |
6282958 |
T |
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| Q |
417 |
tcttcacatcatctctg |
433 |
Q |
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||| ||||||||||||| |
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| T |
6282959 |
tctgcacatcatctctg |
6282975 |
T |
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