View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2641_high_9 (Length: 356)
Name: NF2641_high_9
Description: NF2641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2641_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 16 - 346
Target Start/End: Original strand, 6638549 - 6638879
Alignment:
| Q |
16 |
ccttttaatcaagaggaaatagtagtggtagtgacttatagtgatggtaataagagtccaaggtcggggggttttaatttctcttaatttaaaagattat |
115 |
Q |
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| T |
6638549 |
ccttttaatcaagaggaaatagtagtggcagtgacttgtagtgatggtaataagagtccaaggtcggggggttttaatttctcttaatttaaaagattat |
6638648 |
T |
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| Q |
116 |
ggttgcttattacagaggagatgaacgttcttttccaacaatttttctcaaatatgttggtgatggataaaatcaactcgtccaacaaaccaactttcct |
215 |
Q |
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| T |
6638649 |
ggttgcttattacagaggagatgaacgttcttttccaacaatttctctcaaatatgttggtgatggataaaatcaactcgtccaacaaaccaactttcct |
6638748 |
T |
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| Q |
216 |
taaagtcatgcaattggtggatggggtggtcgaggtcaatgggtatgattcgatgagttgaagtttcctggataatctgctgatgagatttggttttgac |
315 |
Q |
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| T |
6638749 |
taaagtcatgcaattggtggatggggtggtcgaggtcaatgggtatgattcgatgatttgaagtttcctggataatctgctgatgagatttggttttgac |
6638848 |
T |
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| Q |
316 |
gttaagtggtgtgcttggatgtgttcctatg |
346 |
Q |
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| T |
6638849 |
gataagtggtgtgcttagatgtgttcctatg |
6638879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 336
Target Start/End: Original strand, 30862493 - 30862551
Alignment:
| Q |
278 |
gtttcctggataatctgctgatgagatttggttttgacgttaagtggtgtgcttggatg |
336 |
Q |
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| T |
30862493 |
gtttcctggaatatcttttgaagagatttggttttgatgataagtggtgtgcttggatg |
30862551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 336
Target Start/End: Complemental strand, 2387116 - 2387043
Alignment:
| Q |
263 |
attcgatgagttgaagtttcctggataatctgctgatgagatttggttttgacgttaagtggtgtgcttggatg |
336 |
Q |
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|||||||||| |||||||| | || |||| ||| ||||||||||||||| | ||||||||||||||||||| |
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| T |
2387116 |
attcgatgagctgaagttttttcgaatatctattgaagagatttggttttgatgataagtggtgtgcttggatg |
2387043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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