View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2641_low_1 (Length: 610)
Name: NF2641_low_1
Description: NF2641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2641_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 470; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 13 - 592
Target Start/End: Complemental strand, 26891466 - 26890891
Alignment:
| Q |
13 |
gaagcaaaggaacggtgagggcgaaatacggcaaaggaacgacaactgtgaaatacggcaattgaacggcgacaaccaaacaccgcaaaggaacgacgat |
112 |
Q |
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|||||||||||| ||||| |||||||||||| ||| |||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26891466 |
gaagcaaaggaatggtgacggcgaaatacggaaaaagaacgacaactgcaaaatacggaaattgaacggcgacaaccaaaaaccgcaaaggaacgacgat |
26891367 |
T |
|
| Q |
113 |
ggcgtaataagaaaggaagcgcaaaacgaaagtaatgagtattcttcttcttatgtaacagatttacagaggttacagtcgggagaaacaggatgagagg |
212 |
Q |
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||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||| || | ||||||||||||||| |
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| T |
26891366 |
ggcgtaataagaaaggaagcgcaaaacaaaagtgatgagtattcttctt---atgtaacagatttacagaggttacagttgg-ataaacaggatgagagg |
26891271 |
T |
|
| Q |
213 |
tttttgaattggggaagttttgattagttgtacagannnnnnnnacacataatccaacatgtcattcgggacactctcgggaaggaatctgtcgcgagaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26891270 |
tttttgaattggggaagttttgattagttgtacagattttttttacacataatccaacatgtcattcgggacactctcgggaaggaatctgtcgcgagaa |
26891171 |
T |
|
| Q |
313 |
atagtatttttcttaacataaacattcaattatgatatttgcatttctttctcttcccgaatacatatttacatgcacatatagcacattctgctagatt |
412 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26891170 |
atagcatttttcttaacacaaacattcaattatgatatttgcatttctttctcttcccgaatacatatttacatgcacatatagcacattctgctagatt |
26891071 |
T |
|
| Q |
413 |
tgtgatatttacacctaaaaccttacaattgaaacatcttcccaccatatatgtcaatgaattgggacaccaaacagtcgagcctcgtgtgtccagggtg |
512 |
Q |
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| T |
26891070 |
tgtgatatttacacctaaaaccttacaattgaaacatcttcccaccatatatgtcaatgaattgggacaccaaacagtcgagcctcttgtgtccagggtg |
26890971 |
T |
|
| Q |
513 |
aaaaggcattcattcacatcatcataccagaaagagattgtgatgaaccatctgtcagtatcacaatatgtacaaactct |
592 |
Q |
| |
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| T |
26890970 |
aaaaggcattcattcacattatcataccagaaagagattgtgatgaaccatctgtcagtatcacaatatgtacaaactct |
26890891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 546 - 589
Target Start/End: Complemental strand, 26641290 - 26641247
Alignment:
| Q |
546 |
gagattgtgatgaaccatctgtcagtatcacaatatgtacaaac |
589 |
Q |
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| T |
26641290 |
gagattgtgatgaaccatctgtcaatatcacagtatgtagaaac |
26641247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 546 - 589
Target Start/End: Complemental strand, 26747256 - 26747213
Alignment:
| Q |
546 |
gagattgtgatgaaccatctgtcagtatcacaatatgtacaaac |
589 |
Q |
| |
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|||||||||||||||||||||||| ||||||| |||||| |||| |
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| T |
26747256 |
gagattgtgatgaaccatctgtcaatatcacagtatgtagaaac |
26747213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 412 - 486
Target Start/End: Complemental strand, 5078720 - 5078646
Alignment:
| Q |
412 |
ttgtgatatttacacctaaaaccttacaattgaaacatcttcccaccatatatgtcaatgaattgggacaccaaa |
486 |
Q |
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| T |
5078720 |
ttgtgatatttacacctaaaaacttacaattgagatgtcttcccaccatagaagtcaatgaattgggacaccaaa |
5078646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 549 - 592
Target Start/End: Original strand, 18692037 - 18692080
Alignment:
| Q |
549 |
attgtgatgaaccatctgtcagtatcacaatatgtacaaactct |
592 |
Q |
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|||||||||||||||||||| |||| | |||||||||||||||| |
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| T |
18692037 |
attgtgatgaaccatctgtcggtatgaaaatatgtacaaactct |
18692080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 212 - 325
Target Start/End: Complemental strand, 12072771 - 12072659
Alignment:
| Q |
212 |
gtttttgaattggggaagttttgattagttgtacagannnnnnnnacacataatccaacatgtcattcgggacactctcgggaaggaatctgtcgcgaga |
311 |
Q |
| |
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|||||||||||||||||| ||| |||| |||| |||| |||| ||||| ||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
12072771 |
gtttttgaattggggaagattttattatttgtccagatgtcttttacacgtaatc-aacatgtcattcgggtcactctcgggaaggaaactgtcgcgaga |
12072673 |
T |
|
| Q |
312 |
aatagtatttttct |
325 |
Q |
| |
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||||| |||||||| |
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| T |
12072672 |
aatagcatttttct |
12072659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 130
Target Start/End: Complemental strand, 12072957 - 12072865
Alignment:
| Q |
32 |
ggcgaaatacggcaaaggaacgacaactgtgaaatacggcaattgaacggcgacaaccaaacaccgcaaaggaacgacgatggcgtaataagaaaggaa |
130 |
Q |
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||||||||||||||||||||||||||| | ||||||||||||| |||||| |||||| |||||||||||||| |||||||||| ||||||| |
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| T |
12072957 |
ggcgaaatacggcaaaggaacgacaacgg------acggcaattgaacaatgacaacgaaacacggcaaaggaacgacgccggcgtaataacaaaggaa |
12072865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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