View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2641_low_12 (Length: 287)
Name: NF2641_low_12
Description: NF2641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2641_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 271
Target Start/End: Complemental strand, 53855252 - 53854989
Alignment:
| Q |
13 |
ggaacaacagcaatgaaatttgagattaccgagtggaactcgttgagcatcgaagcacagctttcttcgctttctccggcataactccgggaagtgattg |
112 |
Q |
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| T |
53855252 |
ggaacaacagcaatgaaatttgagattaccgagtggaactcgttgagcatcgaagcacagctttcttcgctttctccggcataactccgggaagtgattg |
53855153 |
T |
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| Q |
113 |
agttgcggcgttactctgagcttgaaatcgaagaagcctctagaactcgccgccattaaattaaattaa-----attagtaacattgacaaatcaagtac |
207 |
Q |
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| T |
53855152 |
agttgcggcgttactctgagcttgaaatcgaagaagcctctagaactcgccgccattaaattaaattaaattaaattagtaacattgacaaatcaagtac |
53855053 |
T |
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| Q |
208 |
aatgcaatgtgtaagtgtaactaacttccaaatactcttcctctttcttttacgagctataact |
271 |
Q |
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| T |
53855052 |
aatgcaatgtgtaagtgtaactaacttccaaatactcttcctctttcttttacgagctataact |
53854989 |
T |
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