View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2641_low_13 (Length: 279)
Name: NF2641_low_13
Description: NF2641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2641_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 5 - 188
Target Start/End: Original strand, 39731637 - 39731820
Alignment:
| Q |
5 |
tgagaagaaagtttgaggaaaacatcaaaactgtttgaaagtacaaatgtacccttgtcttaatttgaaaatctcaatttaacctatcgtgaaaggctat |
104 |
Q |
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| T |
39731637 |
tgagaagaaagtttgaggaaagcatcaaaactgtttgaaagtacaaatgtacccttgtcttaatttgaaaatctcaatttaacctatcgtgaaaggctat |
39731736 |
T |
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| Q |
105 |
gctactttgttgtgctatatatactattcatcttctagctattattgctatcaccaacgcacaagtaatgaaatgcaacccagc |
188 |
Q |
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| T |
39731737 |
gctactttgttgtgctatatatactattcatcttctagctattattgctatcaccaacgcaaaagtaatgaaatgcaacccagc |
39731820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 5 - 188
Target Start/End: Complemental strand, 47117410 - 47117227
Alignment:
| Q |
5 |
tgagaagaaagtttgaggaaaacatcaaaactgtttgaaagtacaaatgtacccttgtcttaatttgaaaatctcaatttaacctatcgtgaaaggctat |
104 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||| |||| |
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| T |
47117410 |
tgagaagaaagtttgaggaaagcatcaaaactgtttgaaagtacaaatgtaccattgtcttaatttgaaaatctcaatttaacctatcttaaaagcctat |
47117311 |
T |
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| Q |
105 |
gctactttgttgtgctatatatactattcatcttctagctattattgctatcaccaacgcacaagtaatgaaatgcaacccagc |
188 |
Q |
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| T |
47117310 |
gctactttgttgtgctatatatactattcatctttcagctattattgctatcatcaacgcacaagtaatgaaatgcaacccagc |
47117227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 5 - 186
Target Start/End: Complemental strand, 30674587 - 30674410
Alignment:
| Q |
5 |
tgagaagaaagtttgaggaaaacatcaaaactgtttgaaagtacaaatgtacccttgtcttaatttgaaaatctcaatttaacctatcgtgaaaggctat |
104 |
Q |
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||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30674587 |
tgagaagaaagtttgaggaaagcatcaagactctttgaaagtacaaatgtacccttatcttaatttgaaaatctcaatttaacctatcgtgaaaggctat |
30674488 |
T |
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| Q |
105 |
gctactttgttgtgctatatatactattcatcttctagctattattgctatcaccaacgcacaagtaatgaaatgcaaccca |
186 |
Q |
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| T |
30674487 |
gctactttgttgtgctatatc----attcatcttctagctattattgctatcaccaatgcacaagaaatgaaatgcaaccca |
30674410 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 179
Target Start/End: Complemental strand, 37543573 - 37543411
Alignment:
| Q |
8 |
gaagaaagtttgaggaaaacatcaaaactgtttgaaagtacaaatgtacccttgtcttaatttgaaaatctcaatttaacctatcgtgaaaggctatgct |
107 |
Q |
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||||||| || ||||||| |||||||| ||||||||||||| |||||| ||||| |||| || ||||||||||||||||| ||| ||||||||||||| |
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| T |
37543573 |
gaagaaaattggaggaaagcatcaaaagtgtttgaaagtactaatgtagccttgccttagttcaaaaatctcaatttaaccaatcctgaaaggctatgca |
37543474 |
T |
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| Q |
108 |
actttgttgtgctatatatactattcatcttctagctattattgctatcaccaacgcacaagtaatgaaatg |
179 |
Q |
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|||| | |||||| |||||| || || ||||||||||||||||||| ||||||| ||||||||| |
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| T |
37543473 |
actt--------ttcatataccattcattttata-ctattattgctatcaccaatgcacaagaaatgaaatg |
37543411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 51535012 - 51534976
Alignment:
| Q |
143 |
ctattattgctatcaccaacgcacaagtaatgaaatg |
179 |
Q |
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| T |
51535012 |
ctattattgctatcaccaatgcacaagaaatgaaatg |
51534976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 18869123 - 18869080
Alignment:
| Q |
5 |
tgagaagaaagtttgaggaaaacatcaaaactgtttgaaagtac |
48 |
Q |
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|||| |||||||||||||||| ||||||||||||||||| |||| |
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| T |
18869123 |
tgaggagaaagtttgaggaaagcatcaaaactgtttgaaggtac |
18869080 |
T |
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