View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2641_low_17 (Length: 256)

Name: NF2641_low_17
Description: NF2641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2641_low_17
NF2641_low_17
[»] chr1 (2 HSPs)
chr1 (11-86)||(1464854-1464929)
chr1 (188-256)||(1465034-1465102)
[»] chr8 (1 HSPs)
chr8 (188-256)||(26792673-26792744)


Alignment Details
Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 1464854 - 1464929
Alignment:
Q  11 cagagacctaagctattttattggttttttctctttctcatctaagcttagataagatattagtatctaacaagaa 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1464854 cagagacctaagctattttattggttttttctctttctcatctaagcttagataagatattagtatctaacaagaa 1464929  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 1465034 - 1465102
Alignment:
Q  188 tattgaaaattaataggattaagttgttaacataagatctttacattttagattttctatatcaaacct 256  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1465034 tattgaaaattaataggatcaagttgttaacataagatctttacattttagattttctatatcaaacct 1465102  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 26792673 - 26792744
Alignment:
Q  188 tattgaaaattaataggattaagttgttaac--ataagatctttaca-ttttagattttctatatcaaacct 256  Q
    ||||||||||| | || ||||||||||||||  |||||||||||||| |||||||||| |||||||||||||    
T  26792673 tattgaaaatttacagcattaagttgttaacatataagatctttacatttttagatttcctatatcaaacct 26792744  T

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