View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2641_low_5 (Length: 464)
Name: NF2641_low_5
Description: NF2641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2641_low_5 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 13 - 448
Target Start/End: Original strand, 24614965 - 24615400
Alignment:
| Q |
13 |
aagaatatctcgatttaagaaatttgtaataatatgtgacattttattgtctgtcgaaaactaatgttcacatctttttgatgtttgtttcatagtttaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24614965 |
aagaatatctcgatttaagaaatttgtattaatatgtaacattttattgtctgtcgaaaactaatgttcacatctttttgatgtttgtttcatagtttaa |
24615064 |
T |
|
| Q |
113 |
tatagaaagttaagtaccaattctgcaggcttctttattaaattgctttattcttcagtcttgctaaattttgtggatttgttaatgctgtt---tttct |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
24615065 |
tatagaaagttaagtaccaattctgcaggcttctttattaaattgctttattcttcagtcttactaaattttgtggatttgttaatgctgttatgtttct |
24615164 |
T |
|
| Q |
210 |
gtcctattatgttgtgaatgtcaagttttgaattgtttttaaacatcaaaatctaatttcaagtattacaggactagttaataagtattacatgaatcat |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
24615165 |
gtcctattatgttgtgaatgtcaagttttgaattgtttttaaacatcaaaatctaatttcaagtattacaggactagttaacaagtattacatgaatcat |
24615264 |
T |
|
| Q |
310 |
ttcaaatatatataacaaaatcatgagaggaaatactggtttgtgaggaaaacaatgacaatatcatctgttttaaataatatggaaagcagattatgtc |
409 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24615265 |
ttcaaatatatataagaaaatcatg-gaggaaatactggtctgtgaggaaaacaatgacaatatcatctgttttaaataatatagaaagcagattatgtc |
24615363 |
T |
|
| Q |
410 |
ttcaagatcttggtaaacagagagttccaatatagaaag |
448 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||| |
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|
| T |
24615364 |
ttcaagatcttggtaa--atagagttccaatatagaaag |
24615400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 26 - 266
Target Start/End: Complemental strand, 24108684 - 24108442
Alignment:
| Q |
26 |
tttaagaaatttgtaataatatgtgacattttattgtctgtcgaaaacta-atgttcacatctttttgatgtttgtttcatagtttaatatagaaagtta |
124 |
Q |
| |
|
||||||||||| ||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||| |
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|
| T |
24108684 |
tttaagaaattcgtatcaatatgtgacatttcattgtctgtcgaaaactatatgttcacatctttttgatgtttgtttcatcatttaatataaaaagtta |
24108585 |
T |
|
| Q |
125 |
agtaccaattctgcaggcttctttattaaattgctttattcttcagtcttgctaaattttgtggatttgttaatgctgtt---tttctgtcctattatgt |
221 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||| ||||| || ||||||| ||||||||| ||||||||||| ||| ||| ||||||| |
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|
| T |
24108584 |
agtaccaactctgcatacttctttattaaattgctttaatcttctgt----ctaaattgtgtggatttcttaatgctgttatgtttttgttgtattatga |
24108489 |
T |
|
| Q |
222 |
tgtgaatgtcaagttttgaattgtttt--taaacatcaaaatctaat |
266 |
Q |
| |
|
||||||| |||||||||||||| |||| |||||||||||| ||||| |
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|
| T |
24108488 |
tgtgaatttcaagttttgaattttttttataaacatcaaaaactaat |
24108442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 24116395 - 24116258
Alignment:
| Q |
25 |
atttaagaaatttgtaataatatgtgacattttattgtctgtcgaaaactaatgttcacatctttttgatgtttgtttcatagtttaatatagaaagtta |
124 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||| |||||||| | |||||||||||| ||||||||||||| || ||||||||||||| || | |
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|
| T |
24116395 |
atttaagaaatttgtatcaatatgtgacatttcattgtctatcgaaaaccattgttcacatcttgttgatgtttgttttatcgtttaatatagaatgtaa |
24116296 |
T |
|
| Q |
125 |
agtaccaattctgcaggcttctttattaaattgcttta |
162 |
Q |
| |
|
| ||||||||||||| ||||| |||||||||||||||| |
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|
| T |
24116295 |
actaccaattctgcaagcttcattattaaattgcttta |
24116258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 299 - 448
Target Start/End: Complemental strand, 24116047 - 24115903
Alignment:
| Q |
299 |
acatgaatcatttcaaatatatataacaaaatcatgagaggaaatactggtttgtgaggaaaacaatgacaatatc-atctgttttaaataatatggaaa |
397 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||| |
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|
| T |
24116047 |
acatgaatcatttcaaatata----agaaaatcatgagaggaaatactggtttgtgaggaaaacaatgaggatatctatctgttttaaataatataaaaa |
24115952 |
T |
|
| Q |
398 |
gcagattatgtcttcaagatcttggtaaacagagagttccaatatagaaag |
448 |
Q |
| |
|
||||||||||| || ||||||||||||| | |||||| |||||||||||| |
|
|
| T |
24115951 |
gcagattatgtttttaagatcttggtaa--atagagttgcaatatagaaag |
24115903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 296 - 369
Target Start/End: Complemental strand, 24102272 - 24102197
Alignment:
| Q |
296 |
attacatgaatcatttcaaatatatata--acaaaatcatgagaggaaatactggtttgtgaggaaaacaatgaca |
369 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
24102272 |
attacatgaatcatttcaaatatatatataagaaaatcatgagaggaaatactggtttgtgaggaaaataatgaca |
24102197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 162
Target Start/End: Original strand, 23693539 - 23693671
Alignment:
| Q |
26 |
tttaagaaatttgtaataatatgtgacattttattgtctgtcgaaaactaatgttcacatctttttgatgtttgtttcatagtttaatatagaaagttaa |
125 |
Q |
| |
|
||||| ||||||||| ||||||| |||||| |||||| |||| ||||||||||||||||| | || || || ||| | ||||||||| ||| |||| |
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|
| T |
23693539 |
tttaaaaaatttgtatcaatatgttacatttcattgtccgtcggaaactaatgttcacatcctgttaattttcgttctgtgatttaatataaaaatttaa |
23693638 |
T |
|
| Q |
126 |
gtaccaattctgcaggcttctttattaaattgcttta |
162 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||| |
|
|
| T |
23693639 |
gtacccgttc----ggcttctttattaaattgcttta |
23693671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 162
Target Start/End: Original strand, 23711979 - 23712111
Alignment:
| Q |
26 |
tttaagaaatttgtaataatatgtgacattttattgtctgtcgaaaactaatgttcacatctttttgatgtttgtttcatagtttaatatagaaagttaa |
125 |
Q |
| |
|
||||| ||||||||| ||||||| |||||| |||||| |||| ||||||||||||||||| | || || || ||| | ||||||||| ||| |||| |
|
|
| T |
23711979 |
tttaaaaaatttgtatcaatatgttacatttcattgtccgtcggaaactaatgttcacatcctgttaattttcgttctgtgatttaatataaaaatttaa |
23712078 |
T |
|
| Q |
126 |
gtaccaattctgcaggcttctttattaaattgcttta |
162 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||| |
|
|
| T |
23712079 |
gtacccgttc----ggcttctttattaaattgcttta |
23712111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 162
Target Start/End: Original strand, 23730435 - 23730567
Alignment:
| Q |
26 |
tttaagaaatttgtaataatatgtgacattttattgtctgtcgaaaactaatgttcacatctttttgatgtttgtttcatagtttaatatagaaagttaa |
125 |
Q |
| |
|
||||| ||||||||| ||||||| |||||| |||||| |||| ||||||||||||||||| | || || || ||| | ||||||||| ||| |||| |
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|
| T |
23730435 |
tttaaaaaatttgtatcaatatgttacatttcattgtccgtcggaaactaatgttcacatcctgttaattttcgttctgtgatttaatataaaaatttaa |
23730534 |
T |
|
| Q |
126 |
gtaccaattctgcaggcttctttattaaattgcttta |
162 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||| |
|
|
| T |
23730535 |
gtacccgttc----ggcttctttattaaattgcttta |
23730567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 162
Target Start/End: Original strand, 23748890 - 23749022
Alignment:
| Q |
26 |
tttaagaaatttgtaataatatgtgacattttattgtctgtcgaaaactaatgttcacatctttttgatgtttgtttcatagtttaatatagaaagttaa |
125 |
Q |
| |
|
||||| ||||||||| ||||||| |||||| |||||| |||| ||||||||||||||||| | || || || ||| | ||||||||| ||| |||| |
|
|
| T |
23748890 |
tttaaaaaatttgtatcaatatgttacatttcattgtccgtcggaaactaatgttcacatcctgttaattttcgttctgtgatttaatataaaaatttaa |
23748989 |
T |
|
| Q |
126 |
gtaccaattctgcaggcttctttattaaattgcttta |
162 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||| |
|
|
| T |
23748990 |
gtacccgttc----ggcttctttattaaattgcttta |
23749022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 23690136 - 23690187
Alignment:
| Q |
111 |
aatatagaaagttaagtaccaattctgcaggcttctttattaaattgcttta |
162 |
Q |
| |
|
|||||| ||||||||||||||||| || ||||||| ||||||||||||||| |
|
|
| T |
23690136 |
aatataaaaagttaagtaccaattttgtcggcttctgtattaaattgcttta |
23690187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 24062373 - 24062424
Alignment:
| Q |
111 |
aatatagaaagttaagtaccaattctgcaggcttctttattaaattgcttta |
162 |
Q |
| |
|
|||||| ||||||||||||||||| || ||||||| ||||||||||||||| |
|
|
| T |
24062373 |
aatataaaaagttaagtaccaattttgtcggcttctgtattaaattgcttta |
24062424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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