View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2641_low_7 (Length: 376)

Name: NF2641_low_7
Description: NF2641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2641_low_7
NF2641_low_7
[»] chr8 (9 HSPs)
chr8 (19-364)||(33617657-33618002)
chr8 (19-53)||(42880944-42880978)
chr8 (19-52)||(8034452-8034485)
chr8 (19-52)||(26280824-26280857)
chr8 (19-52)||(34266009-34266042)
chr8 (19-52)||(36540284-36540317)
chr8 (19-52)||(37717360-37717393)
chr8 (19-52)||(38955234-38955267)
chr8 (19-51)||(38402249-38402281)
[»] chr4 (6 HSPs)
chr4 (19-54)||(43481079-43481114)
chr4 (19-52)||(3036095-3036128)
chr4 (19-52)||(5165854-5165887)
chr4 (19-52)||(52798275-52798308)
chr4 (19-51)||(37251111-37251143)
chr4 (18-54)||(47934111-47934147)
[»] chr7 (5 HSPs)
chr7 (19-53)||(6973542-6973576)
chr7 (19-53)||(38889533-38889567)
chr7 (19-52)||(3766808-3766841)
chr7 (19-52)||(9233802-9233835)
chr7 (19-52)||(31077943-31077976)
[»] chr6 (3 HSPs)
chr6 (19-53)||(27094847-27094881)
chr6 (19-52)||(13732809-13732842)
chr6 (19-52)||(31802050-31802083)
[»] chr5 (6 HSPs)
chr5 (19-53)||(5900288-5900322)
chr5 (19-52)||(24033074-24033107)
chr5 (19-52)||(31074167-31074200)
chr5 (19-52)||(33736054-33736087)
chr5 (19-52)||(35511996-35512029)
chr5 (19-52)||(40091474-40091507)
[»] chr3 (4 HSPs)
chr3 (19-53)||(52974093-52974127)
chr3 (18-52)||(53752739-53752773)
chr3 (19-52)||(40723700-40723733)
chr3 (19-52)||(51425837-51425870)
[»] chr2 (5 HSPs)
chr2 (19-53)||(5062293-5062327)
chr2 (18-52)||(38557262-38557296)
chr2 (20-53)||(22718102-22718135)
chr2 (19-52)||(39408730-39408763)
chr2 (19-51)||(43214354-43214386)
[»] scaffold0028 (1 HSPs)
scaffold0028 (19-52)||(112105-112138)
[»] chr1 (2 HSPs)
chr1 (19-52)||(26550491-26550524)
chr1 (19-52)||(44732630-44732663)


Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 364
Target Start/End: Complemental strand, 33618002 - 33617657
Alignment:
Q  19 atatccctaccaactgagttaagctcgcggggatggccgacactgtctatacagacacttttgtttaacaagcatatttttagattaaattgactatata 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||    
T  33618002 atatccctaccaactgagttaagctcacggggatggccgacactgtctatatagacacttttatttaacaagcatatttttagattaaattgattatata 33617903  T
Q  119 atgaaatgttcatttcagttatttactgatattggatcgcacaaattggagaactaatatgctgacttcattactagtgccttacattttcttcagcttt 218  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33617902 ataaaatgttcatttcagttatttactgatattggatcgcacaaattggagaactaatatgctgacttcattactagtgccttacattttcttcagcttt 33617803  T
Q  219 ccagagtccttgtataattttttcaggtaatgtttaatagtaatttttcatcatcctcctcttctttcacatttgagttctacactgaaaatttgtcgaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33617802 ccagagtccttgtataattttttcaggtaatgtttaatagtaatttttcatcatcctcctcttctttcacatttgagttctacactgaaaatttgtcgaa 33617703  T
Q  319 attttttattattttcagaggaggagttggaaaatggtttgctttc 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  33617702 attttttattattttcagaggaggagttggaaaatggtttgctttc 33617657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 42880978 - 42880944
Alignment:
Q  19 atatccctaccaactgagttaagctcgcggggatg 53  Q
    |||||||||||||||||||||||||| ||||||||    
T  42880978 atatccctaccaactgagttaagctcacggggatg 42880944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 8034452 - 8034485
Alignment:
Q  19 atatccctaccaactgagttaagctcgcggggat 52  Q
    |||||||||||||||||||||||||| |||||||    
T  8034452 atatccctaccaactgagttaagctcacggggat 8034485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 26280824 - 26280857
Alignment:
Q  19 atatccctaccaactgagttaagctcgcggggat 52  Q
    |||||||||||||||||||||||||| |||||||    
T  26280824 atatccctaccaactgagttaagctcacggggat 26280857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 34266042 - 34266009
Alignment:
Q  19 atatccctaccaactgagttaagctcgcggggat 52  Q
    |||||||||||||||||| |||||||||||||||    
T  34266042 atatccctaccaactgagctaagctcgcggggat 34266009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 36540317 - 36540284
Alignment:
Q  19 atatccctaccaactgagttaagctcgcggggat 52  Q
    |||||||||||||||||||||||||| |||||||    
T  36540317 atatccctaccaactgagttaagctcacggggat 36540284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 37717393 - 37717360
Alignment:
Q  19 atatccctaccaactgagttaagctcgcggggat 52  Q
    |||||||||||||||||||||||||| |||||||    
T  37717393 atatccctaccaactgagttaagctcacggggat 37717360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 38955234 - 38955267
Alignment:
Q  19 atatccctaccaactgagttaagctcgcggggat 52  Q
    |||||||||||||||||||||||||| |||||||    
T  38955234 atatccctaccaactgagttaagctcacggggat 38955267  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 38402281 - 38402249
Alignment:
Q  19 atatccctaccaactgagttaagctcgcgggga 51  Q
    |||||||||||||||||||||||||| ||||||    
T  38402281 atatccctaccaactgagttaagctcacgggga 38402249  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 43481079 - 43481114
Alignment:
Q  19 atatccctaccaactgagttaagctcgcggggatgg 54  Q
    |||||||||||||||||||||||||| |||||||||    
T  43481079 atatccctaccaactgagttaagctcacggggatgg 43481114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 3036095 - 3036128
Alignment:
Q  19 atatccctaccaactgagttaagctcgcggggat 52  Q
    |||||||||||||||||||||||||| |||||||    
T  3036095 atatccctaccaactgagttaagctcacggggat 3036128  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 5165887 - 5165854
Alignment:
Q  19 atatccctaccaactgagttaagctcgcggggat 52  Q
    |||||||||||||||||||||||||| |||||||    
T  5165887 atatccctaccaactgagttaagctcacggggat 5165854  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 52798308 - 52798275
Alignment:
Q  19 atatccctaccaactgagttaagctcgcggggat 52  Q
    |||||||||||||||||||||||||| |||||||    
T  52798308 atatccctaccaactgagttaagctcacggggat 52798275  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 37251143 - 37251111
Alignment:
Q  19 atatccctaccaactgagttaagctcgcgggga 51  Q
    |||||||||||||||||||||||||| ||||||    
T  37251143 atatccctaccaactgagttaagctcacgggga 37251111  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 47934111 - 47934147
Alignment:
Q  18 catatccctaccaactgagttaagctcgcggggatgg 54  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  47934111 catatccctaccaactgagctaagctcacggggatgg 47934147  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 6973542 - 6973576
Alignment:
Q  19 atatccctaccaactgagttaagctcgcggggatg 53  Q
    |||||||||||||||||||||||||| ||||||||    
T  6973542 atatccctaccaactgagttaagctcacggggatg 6973576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 38889533 - 38889567
Alignment:
Q  19 atatccctaccaactgagttaagctcgcggggatg 53  Q
    |||||||||||||||||||||||||| ||||||||    
T  38889533 atatccctaccaactgagttaagctcacggggatg 38889567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 3766841 - 3766808
Alignment:
Q  19 atatccctaccaactgagttaagctcgcggggat 52  Q
    |||||||||||||||||||||||||| |||||||    
T  3766841 atatccctaccaactgagttaagctcacggggat 3766808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 9233802 - 9233835
Alignment:
Q  19 atatccctaccaactgagttaagctcgcggggat 52  Q
    |||||||||||||||||||||||||| |||||||    
T  9233802 atatccctaccaactgagttaagctcacggggat 9233835  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 31077943 - 31077976
Alignment:
Q  19 atatccctaccaactgagttaagctcgcggggat 52  Q
    |||||||||||||||||||||||||| |||||||    
T  31077943 atatccctaccaactgagttaagctcacggggat 31077976  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 27094847 - 27094881
Alignment:
Q  19 atatccctaccaactgagttaagctcgcggggatg 53  Q
    |||||||||||||||||||||||||| ||||||||    
T  27094847 atatccctaccaactgagttaagctcacggggatg 27094881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 13732842 - 13732809
Alignment:
Q  19 atatccctaccaactgagttaagctcgcggggat 52  Q
    |||||||||||||||||||||||||| |||||||    
T  13732842 atatccctaccaactgagttaagctcacggggat 13732809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 31802083 - 31802050
Alignment:
Q  19 atatccctaccaactgagttaagctcgcggggat 52  Q
    |||||||||||||||||||||||||| |||||||    
T  31802083 atatccctaccaactgagttaagctcacggggat 31802050  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 5900322 - 5900288
Alignment:
Q  19 atatccctaccaactgagttaagctcgcggggatg 53  Q
    |||||||||||||||||||||||||| ||||||||    
T  5900322 atatccctaccaactgagttaagctcacggggatg 5900288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 24033107 - 24033074
Alignment:
Q  19 atatccctaccaactgagttaagctcgcggggat 52  Q
    |||||||||||||||||| |||||||||||||||    
T  24033107 atatccctaccaactgagctaagctcgcggggat 24033074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 31074167 - 31074200
Alignment:
Q  19 atatccctaccaactgagttaagctcgcggggat 52  Q
    |||||||||||||||||||||||||| |||||||    
T  31074167 atatccctaccaactgagttaagctcacggggat 31074200  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 33736054 - 33736087
Alignment:
Q  19 atatccctaccaactgagttaagctcgcggggat 52  Q
    |||||||||||||||||||||||||| |||||||    
T  33736054 atatccctaccaactgagttaagctcccggggat 33736087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 35511996 - 35512029
Alignment:
Q  19 atatccctaccaactgagttaagctcgcggggat 52  Q
    |||||||||||||||||||||||||| |||||||    
T  35511996 atatccctaccaactgagttaagctcacggggat 35512029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 40091507 - 40091474
Alignment:
Q  19 atatccctaccaactgagttaagctcgcggggat 52  Q
    |||||||||||||||||||||||||| |||||||    
T  40091507 atatccctaccaactgagttaagctcacggggat 40091474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 52974093 - 52974127
Alignment:
Q  19 atatccctaccaactgagttaagctcgcggggatg 53  Q
    |||||||||||||||||||||||||| ||||||||    
T  52974093 atatccctaccaactgagttaagctcacggggatg 52974127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 53752739 - 53752773
Alignment:
Q  18 catatccctaccaactgagttaagctcgcggggat 52  Q
    ||||||||||||||||||||||||||| |||||||    
T  53752739 catatccctaccaactgagttaagctcacggggat 53752773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 40723700 - 40723733
Alignment:
Q  19 atatccctaccaactgagttaagctcgcggggat 52  Q
    |||||||||||||||||||||||||| |||||||    
T  40723700 atatccctaccaactgagttaagctctcggggat 40723733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 51425870 - 51425837
Alignment:
Q  19 atatccctaccaactgagttaagctcgcggggat 52  Q
    |||||||||||||||||||||||||| |||||||    
T  51425870 atatccctaccaactgagttaagctcacggggat 51425837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 5062327 - 5062293
Alignment:
Q  19 atatccctaccaactgagttaagctcgcggggatg 53  Q
    |||||||||||||||||||||||||| ||||||||    
T  5062327 atatccctaccaactgagttaagctcacggggatg 5062293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 38557262 - 38557296
Alignment:
Q  18 catatccctaccaactgagttaagctcgcggggat 52  Q
    ||||||||||||||||||||||||||| |||||||    
T  38557262 catatccctaccaactgagttaagctcacggggat 38557296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 22718102 - 22718135
Alignment:
Q  20 tatccctaccaactgagttaagctcgcggggatg 53  Q
    ||||||||||||||||||||||||| ||||||||    
T  22718102 tatccctaccaactgagttaagctcacggggatg 22718135  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 39408730 - 39408763
Alignment:
Q  19 atatccctaccaactgagttaagctcgcggggat 52  Q
    |||||||||||||||||||||||||| |||||||    
T  39408730 atatccctaccaactgagttaagctcacggggat 39408763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 43214386 - 43214354
Alignment:
Q  19 atatccctaccaactgagttaagctcgcgggga 51  Q
    |||||||||||||||||||||||||| ||||||    
T  43214386 atatccctaccaactgagttaagctcacgggga 43214354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 112138 - 112105
Alignment:
Q  19 atatccctaccaactgagttaagctcgcggggat 52  Q
    |||||||||||||||||||||||||| |||||||    
T  112138 atatccctaccaactgagttaagctcacggggat 112105  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 26550524 - 26550491
Alignment:
Q  19 atatccctaccaactgagttaagctcgcggggat 52  Q
    |||||||||||||||||||||||||| |||||||    
T  26550524 atatccctaccaactgagttaagctcacggggat 26550491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 44732663 - 44732630
Alignment:
Q  19 atatccctaccaactgagttaagctcgcggggat 52  Q
    |||||||||||||||||||||||||| |||||||    
T  44732663 atatccctaccaactgagttaagctcacggggat 44732630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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