View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2642_high_13 (Length: 241)
Name: NF2642_high_13
Description: NF2642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2642_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 19077112 - 19076897
Alignment:
| Q |
9 |
gaagaatatcaagaaaggaaaataaaaacaataatcaaacaacctttcaagcttagcaaagaagatgcaacatcttgcttgttatgtgcagttacaaaat |
108 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
19077112 |
gaagaaaatcaagaaaggaaaataaaaacaataatcaaacaacctttcaagcttagcaaagaagatgcaacctcttgcttgttatgtgcagttacaaaat |
19077013 |
T |
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| Q |
109 |
tctaattagaagatattttcaaactcgcataagcctgtctatgaaatggttcaattaacggtacaaagagattatgaaatgaagagatttgcaagaaatt |
208 |
Q |
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||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
19077012 |
tctgattagaagatattttcaaactcgcataagcctatctatgaaatggttcaattaatggtacaaagagattctgaaatgaagagatttgcaagaaatt |
19076913 |
T |
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| Q |
209 |
atgtgagtccaacctg |
224 |
Q |
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|||||||||||||||| |
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| T |
19076912 |
atgtgagtccaacctg |
19076897 |
T |
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Target: chr3 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 9 - 207
Target Start/End: Original strand, 46920992 - 46921190
Alignment:
| Q |
9 |
gaagaatatcaagaaaggaaaataaaaacaataatcaaacaacctttcaagcttagcaaagaagatgcaacatcttgcttgttatgtgcagttacaaaat |
108 |
Q |
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|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||| |
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| T |
46920992 |
gaagaagatcaagaaaggaaaatgaaaacaataatcaaacaacctttcaagcttagcaaagaagatgcaacctcttgcttgctatgtgtagttacaaaat |
46921091 |
T |
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| Q |
109 |
tctaattagaagatattttcaaactcgcataagcctgtctatgaaatggttcaattaacggtacaaagagattatgaaatgaagagatttgcaagaaat |
207 |
Q |
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|| | ||||||| |||||||||||| ||||||||| ||||| ||| |||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
46921092 |
tcagaatagaagacattttcaaactctcataagcctatctatcaaacggttcatttaatggtacaaagagattatgaaatgaagagatttgcaagaaat |
46921190 |
T |
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