View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2642_high_15 (Length: 224)

Name: NF2642_high_15
Description: NF2642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2642_high_15
NF2642_high_15
[»] chr1 (14 HSPs)
chr1 (1-210)||(33858019-33858228)
chr1 (1-210)||(33922695-33922904)
chr1 (1-53)||(33185027-33185079)
chr1 (1-81)||(19636081-19636165)
chr1 (1-64)||(44288026-44288089)
chr1 (21-64)||(47463656-47463699)
chr1 (4-78)||(44901382-44901453)
chr1 (26-81)||(32226123-32226177)
chr1 (39-85)||(9890927-9890972)
chr1 (26-79)||(44287730-44287783)
chr1 (26-81)||(36497091-36497146)
chr1 (26-81)||(50741416-50741471)
chr1 (20-81)||(31460933-31460994)
chr1 (93-153)||(32226035-32226098)
[»] chr8 (16 HSPs)
chr8 (4-119)||(5124538-5124654)
chr8 (1-70)||(22893072-22893141)
chr8 (27-79)||(27707941-27707993)
chr8 (20-81)||(25029648-25029709)
chr8 (27-107)||(32452412-32452492)
chr8 (1-64)||(14362496-14362559)
chr8 (26-81)||(13341645-13341701)
chr8 (26-81)||(28855449-28855505)
chr8 (1-71)||(14390727-14390796)
chr8 (8-70)||(20304872-20304934)
chr8 (8-70)||(21091505-21091567)
chr8 (8-78)||(5431014-5431082)
chr8 (38-82)||(5263849-5263893)
chr8 (10-70)||(22575707-22575767)
chr8 (26-81)||(22576039-22576094)
chr8 (54-131)||(34850446-34850524)
[»] chr5 (8 HSPs)
chr5 (1-69)||(30874630-30874698)
chr5 (1-87)||(1375050-1375136)
chr5 (19-154)||(37325795-37325928)
chr5 (1-53)||(30212985-30213037)
chr5 (20-81)||(2327478-2327539)
chr5 (26-81)||(1374739-1374794)
chr5 (1-87)||(32766680-32766771)
chr5 (26-78)||(932873-932922)
[»] chr2 (12 HSPs)
chr2 (4-81)||(36421951-36422029)
chr2 (21-81)||(29264414-29264474)
chr2 (1-87)||(17315938-17316025)
chr2 (1-81)||(7893244-7893326)
chr2 (26-81)||(45709798-45709853)
chr2 (1-53)||(43631524-43631580)
chr2 (1-51)||(7154465-7154515)
chr2 (46-82)||(25707996-25708032)
chr2 (31-81)||(17316319-17316369)
chr2 (26-81)||(35819365-35819417)
chr2 (1-29)||(35819316-35819344)
chr2 (1-29)||(45709877-45709905)
[»] chr7 (14 HSPs)
chr7 (5-81)||(22696243-22696319)
chr7 (5-81)||(22023758-22023834)
chr7 (20-81)||(13726430-13726490)
chr7 (20-81)||(19835384-19835445)
chr7 (20-70)||(19423924-19423974)
chr7 (20-80)||(24375578-24375637)
chr7 (26-81)||(24237136-24237191)
chr7 (26-80)||(48826233-48826287)
chr7 (26-80)||(2898503-2898555)
chr7 (1-70)||(24236804-24236878)
chr7 (46-82)||(33649907-33649943)
chr7 (11-63)||(43854324-43854376)
chr7 (103-158)||(48826331-48826389)
chr7 (27-81)||(46660883-46660938)
[»] chr4 (11 HSPs)
chr4 (1-87)||(49600639-49600726)
chr4 (1-82)||(54857388-54857469)
chr4 (1-81)||(34559379-34559459)
chr4 (1-87)||(19238194-19238280)
chr4 (20-81)||(3125230-3125291)
chr4 (1-86)||(8368019-8368106)
chr4 (26-81)||(54857078-54857133)
chr4 (20-81)||(51850453-51850514)
chr4 (31-132)||(11388809-11388909)
chr4 (20-81)||(12049871-12049932)
chr4 (1-81)||(52643441-52643524)
[»] chr3 (6 HSPs)
chr3 (1-71)||(30484872-30484942)
chr3 (11-81)||(31203671-31203741)
chr3 (1-71)||(41654476-41654546)
chr3 (11-71)||(5171035-5171095)
chr3 (1-82)||(17120354-17120432)
chr3 (4-42)||(26007678-26007716)
[»] scaffold0380 (1 HSPs)
scaffold0380 (20-81)||(10497-10558)
[»] scaffold1594 (1 HSPs)
scaffold1594 (5-99)||(825-919)
[»] scaffold1549 (1 HSPs)
scaffold1549 (5-99)||(677-771)
[»] scaffold0252 (1 HSPs)
scaffold0252 (35-81)||(16631-16677)
[»] chr6 (4 HSPs)
chr6 (7-69)||(15584635-15584697)
chr6 (20-81)||(31462450-31462511)
chr6 (154-210)||(313171-313228)
chr6 (38-87)||(10692639-10692688)
[»] scaffold0172 (1 HSPs)
scaffold0172 (20-81)||(30737-30798)
[»] scaffold0072 (1 HSPs)
scaffold0072 (26-86)||(6044-6104)
[»] scaffold0004 (1 HSPs)
scaffold0004 (4-72)||(228065-228130)
[»] scaffold0325 (1 HSPs)
scaffold0325 (38-113)||(12210-12284)


Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 33858228 - 33858019
Alignment:
Q  1 atatttaattttatattaaatatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaatagtggtcttcctgctatacg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33858228 atatttaattttatattaaatatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaatagtggtcttcctgctatacg 33858129  T
Q  101 ccatcccacttttagggtcggccactacacactgtccgggattgactactatgcatcagaaacaaacctaacttgttgaacaaataacgaatatgtaagt 200  Q
     |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33858128 tcatcccacttttagggtctgccactacacactgtccgggattgactactatgcatcagaaacaaacctaacttgttgaacaaataacgaatatgtaagt 33858029  T
Q  201 tgacagcagt 210  Q
    ||||||||||    
T  33858028 tgacagcagt 33858019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 33922695 - 33922904
Alignment:
Q  1 atatttaattttatattaaatatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaatagtggtcttcctgctatacg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33922695 atatttaattttatattaaatatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaatagtggtcttcctgctatacg 33922794  T
Q  101 ccatcccacttttagggtcggccactacacactgtccgggattgactactatgcatcagaaacaaacctaacttgttgaacaaataacgaatatgtaagt 200  Q
     |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33922795 tcatcccacttttagggtctgccactacacactgtccgggattgactactatgcatcagaaacaaacctaacttgttgaacaaataacgaatatgtaagt 33922894  T
Q  201 tgacagcagt 210  Q
    ||||||||||    
T  33922895 tgacagcagt 33922904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 33185079 - 33185027
Alignment:
Q  1 atatttaattttatattaaatatatgtttgtttatactttatagtattattca 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33185079 atatttaattttatattaaatatatgtttgtttatactttatagtattattca 33185027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 19636081 - 19636165
Alignment:
Q  1 atatttaattttatattaa----atatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaata 81  Q
    |||||||||||||||||||    ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||    
T  19636081 atatttaattttatattaattaaatataagtttgtttatactttatcgtattattcatgtaatttgtccaaaaaataatccaata 19636165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 44288026 - 44288089
Alignment:
Q  1 atatttaattttatattaaatatatgtttgtttatactttatagtattattcatgtaatttgtc 64  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||    
T  44288026 atatttaattttatattagatatatgtttgtttataatttatagtattatttatgtaatttgtc 44288089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 47463656 - 47463699
Alignment:
Q  21 tatatgtttgtttatactttatagtattattcatgtaatttgtc 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  47463656 tatatgtttgtttatactttatagtattattcatgtaatttgtc 47463699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 44901453 - 44901382
Alignment:
Q  4 tttaattttatattaaatatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaa 78  Q
    |||| |||||||||||||||||| ||||||||| ||||||   ||  ||||||||||||||||||||||||||||    
T  44901453 tttacttttatattaaatatatggttgtttatattttata---tttatcatgtaatttgtccaaaaaatgatcaa 44901382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 32226177 - 32226123
Alignment:
Q  26 gtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaata 81  Q
    ||||||||||||||||||  ||||||||||||||||| ||||||||| ||||||||    
T  32226177 gtttgtttatactttataccattattcatgtaatttg-ccaaaaaataatcaaata 32226123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 9890972 - 9890927
Alignment:
Q  39 ttatagtattattcatgtaatttgtccaaaaaatgatcaaatagtgg 85  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||    
T  9890972 ttatactattattcatgta-tttgtccaaaaaatgatcaaatagtgg 9890927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 44287730 - 44287783
Alignment:
Q  26 gtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaa 79  Q
    |||||||||| |||||||  |||||||||||||||||| |||||||| ||||||    
T  44287730 gtttgtttattctttataacattattcatgtaatttgttcaaaaaataatcaaa 44287783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 36497091 - 36497146
Alignment:
Q  26 gtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaata 81  Q
    |||||||| || |||||||||||||||||||| |||||| | ||||| ||||||||    
T  36497091 gtttgtttgtattttatagtattattcatgtagtttgtcaacaaaataatcaaata 36497146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 50741416 - 50741471
Alignment:
Q  26 gtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaata 81  Q
    |||||||| |||||| |||||  ||||||||| |||||||||||||| ||||||||    
T  50741416 gtttgtttttactttttagtacaattcatgtagtttgtccaaaaaataatcaaata 50741471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 31460933 - 31460994
Alignment:
Q  20 atatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaata 81  Q
    ||||| ||||||||||| ||||||  |||||||||||||||| | ||| |||| ||||||||    
T  31460933 atataagtttgtttatattttataccattattcatgtaatttattcaacaaataatcaaata 31460994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 153
Target Start/End: Complemental strand, 32226098 - 32226035
Alignment:
Q  93 gctatacgccatcccacttttagggtcggccactacaca---ctgtccgggattgactactatg 153  Q
    ||||||||| ||||||||||| ||||||||| |||||||   || |||| ||||||||||||||    
T  32226098 gctatacgctatcccacttttggggtcggccgctacacaccgctatccgagattgactactatg 32226035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 5124538 - 5124654
Alignment:
Q  4 tttaattttatattaaatatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaa-tgatcaaatagtggtcttcctgctatacgcc 102  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||  || ||| |||||     
T  5124538 tttaattttatactaaatatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaattgatcaaatagcggtcaacccgctttacgct 5124637  T
Q  103 atcccacttttagggtc 119  Q
    ||||||||||| |||||    
T  5124638 atcccacttttggggtc 5124654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 22893141 - 22893072
Alignment:
Q  1 atatttaattttatattaaatatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaa 70  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||| |  |||||||||||||||    
T  22893141 atatttaattttatattagatatatgtttgtttataatttatagtattatttacataatttgtccaaaaa 22893072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 27707993 - 27707941
Alignment:
Q  27 tttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaa 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27707993 tttgtttatactttatagtattattcatgtaatttgtccaaaaaataatcaaa 27707941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 25029648 - 25029709
Alignment:
Q  20 atatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaata 81  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||    
T  25029648 atataagtttgtttatactttatagtaatattcatgtaatttgtccaaaaattaatcaaata 25029709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 32452492 - 32452412
Alignment:
Q  27 tttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaatagtggtcttcctgctatacgccatccc 107  Q
    |||| ||||||||||||||||||||||||||||||  | ||||||||||||||||| |||| ||| | ||||||| |||||    
T  32452492 tttgcttatactttatagtattattcatgtaattttccaaaaaaatgatcaaatagcggtcatcccgttatacgctatccc 32452412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 14362496 - 14362559
Alignment:
Q  1 atatttaattttatattaaatatatgtttgtttatactttatagtattattcatgtaatttgtc 64  Q
    ||||||||||||||| || ||||||||||||||||| |||||||||||||| | ||||||||||    
T  14362496 atatttaattttatagtacatatatgtttgtttataatttatagtattatttacgtaatttgtc 14362559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 13341645 - 13341701
Alignment:
Q  26 gtttgtttatactttat-agtattattcatgtaatttgtccaaaaaatgatcaaata 81  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||    
T  13341645 gtttgtttatactttaacagtattattcatgtaatttgtccaaaaaataatcaaata 13341701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 28855449 - 28855505
Alignment:
Q  26 gtttgtttatactttatagtattattcatgtaatttgtcc-aaaaaatgatcaaata 81  Q
    ||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||    
T  28855449 gtttgtttatactctataatattattcatgtaatttgtccaaaaaaatgatcaaata 28855505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 14390796 - 14390727
Alignment:
Q  1 atatttaattttatattaaatatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaa 71  Q
    ||||||||||||||| || |||||||||||||||||  ||||||||||||| | |||||||||| ||||||    
T  14390796 atatttaattttataatagatatatgtttgtttata-attatagtattatttacgtaatttgtcaaaaaaa 14390727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 20304934 - 20304872
Alignment:
Q  8 attttatattaaatatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaa 70  Q
    ||||||||||| ||||||||||||||||| ||||||| |||||| |  |||||||||||||||    
T  20304934 attttatattagatatatgtttgtttataatttatagaattatttagataatttgtccaaaaa 20304872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 21091567 - 21091505
Alignment:
Q  8 attttatattaaatatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaa 70  Q
    ||||||||||| ||||||||||||||||| ||||||| |||||| |  |||||||||||||||    
T  21091567 attttatattagatatatgtttgtttataatttatagaattatttagataatttgtccaaaaa 21091505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 5431014 - 5431082
Alignment:
Q  8 attttatattaaatatatgtttgtttatactttatagtattattcatgtaatttgt-ccaaaaaatgatcaa 78  Q
    |||||||||| ||||||||  |||||||||||||   ||||||||||||||||||| |||||||||||||||    
T  5431014 attttatattcaatatatggctgtttatacttta---tattattcatgtaatttgtcccaaaaaatgatcaa 5431082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 5263893 - 5263849
Alignment:
Q  38 tttatagtattattcatgtaatttgtccaaaaaatgatcaaatag 82  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||    
T  5263893 tttacagtattattcatgtaatttgtccaaaaaatgattaaatag 5263849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 22575767 - 22575707
Alignment:
Q  10 tttatattaaatatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaa 70  Q
    ||||||||| || |||||||||||||| |||||| ||||||| | |||||||||| |||||    
T  22575767 tttatattacatgtatgtttgtttataatttatactattatttacgtaatttgtcaaaaaa 22575707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 22576094 - 22576039
Alignment:
Q  26 gtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaata 81  Q
    ||||||||||||||||||  |||||||| ||||||||| ||||| || ||||||||    
T  22576094 gtttgtttatactttataccattattcaagtaatttgttcaaaatataatcaaata 22576039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 34850524 - 34850446
Alignment:
Q  54 tgtaatttgtccaaaaaatgatcaaatagtggtc-ttcctgctatacgccatcccacttttagggtcggccactacaca 131  Q
    ||||||||||||||||||| ||||||||| |||| | || |||||| || ||| ||||||| |||| |||| |||||||    
T  34850524 tgtaatttgtccaaaaaattatcaaatagcggtcatacccgctatatgctatctcacttttggggttggccgctacaca 34850446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 30874698 - 30874630
Alignment:
Q  1 atatttaattttatattaaatatatgtttgtttatactttatagtattattcatgtaatttgtccaaaa 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30874698 atatttaattttatattaaatatatgtttgtttatactttatagtattattcatgtaatttgtccaaaa 30874630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 1375050 - 1375136
Alignment:
Q  1 atatttaattttatattaaatatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaatagtggtc 87  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||| | |||||||||| ||||| | ||||||||| ||||    
T  1375050 atatttaattttatattagatatatgtttgtttataatttatagtattatttacgtaatttgtcaaaaaagttatcaaatagcggtc 1375136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 154
Target Start/End: Original strand, 37325795 - 37325928
Alignment:
Q  19 aatatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaatagtggtcttcctgctatacgccatcccacttttagggt 118  Q
    |||||| ||||||||||||||||||| |||   ||||||||||||||||||||| ||||||||| ||||   | |||||| || ||||||||||| ||||    
T  37325795 aatataagtttgtttatactttatagaatt---catgtaatttgtccaaaaaataatcaaatagcggtc--accgctatatgctatcccacttttggggt 37325889  T
Q  119 cggccactacaca---ctgtccgggattgactactatgc 154  Q
    ||||| |||| ||   || ||||||||||||||||||||    
T  37325890 cggccgctacgcaccgctatccgggattgactactatgc 37325928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 30213037 - 30212985
Alignment:
Q  1 atatttaattttatattaaatatatgtttgtttatactttatagtattattca 53  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||| |||||    
T  30213037 atatttaattttatattaaatatatgttcgtttacactttatagtatcattca 30212985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 2327539 - 2327478
Alignment:
Q  20 atatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaata 81  Q
    ||||| ||||||||||||||||||| ||| ||||| |||||||| |||||||| ||||||||    
T  2327539 atataagtttgtttatactttatagcatttttcatctaatttgttcaaaaaataatcaaata 2327478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 1374739 - 1374794
Alignment:
Q  26 gtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaata 81  Q
    ||||||||||| ||||||  |||||||||||||||||| |||||||| ||||||||    
T  1374739 gtttgtttatattttataacattattcatgtaatttgttcaaaaaataatcaaata 1374794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 32766680 - 32766771
Alignment:
Q  1 atatttaattttatattaaatatatgtttgtttatactt-----tatagtattattcatgtaatttgtccaaaaaatgatcaaatagtggtc 87  Q
    |||||||||||||||||| ||||||||| ||||||| ||     |||||||||||| | |||||||||| ||||| | ||||||||| ||||    
T  32766680 atatttaattttatattagatatatgttagtttataatttatagtatagtattatttacgtaatttgtcaaaaaagttatcaaatagcggtc 32766771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 932873 - 932922
Alignment:
Q  26 gtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaa 78  Q
    ||||||||| ||||||||   ||||||||||||||||||||||||||||||||    
T  932873 gtttgtttagactttata---ttattcatgtaatttgtccaaaaaatgatcaa 932922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 36422029 - 36421951
Alignment:
Q  4 tttaattttatattaaatatatgtttgtttatactttatagtattattcatgtaatttgt-ccaaaaaatgatcaaata 81  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  36422029 tttaattttatattaaatatatgtttatttatactttatagtattattcatgtaatttatcccaaaaaatgatcaaata 36421951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 29264414 - 29264474
Alignment:
Q  21 tatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaata 81  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29264414 tataagtttgtttatactttatagtattattcatgtaatttgtccaaaaaataatcaaata 29264474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 17316025 - 17315938
Alignment:
Q  1 atatttaattttatattaaatatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaa-tgatcaaatagtggtc 87  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||| | |||||||||| |||||| | ||||||||| ||||    
T  17316025 atatttaattttatattagatatatgtttgtttataatttatagtattatttacgtaatttgtcaaaaaaagttatcaaatagcggtc 17315938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 7893326 - 7893244
Alignment:
Q  1 atatttaattttatattaaatatatgtttgtttatactttatagtattattcat---gtaatttgtccaaaaaatgatcaaata 81  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||| ||    |||||||| |||||||| ||||||||    
T  7893326 atatttaattt-atattaaatataagtttgtttatactttatagtattattaatatactaatttgttcaaaaaataatcaaata 7893244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 45709853 - 45709798
Alignment:
Q  26 gtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaata 81  Q
    ||||||||||||||||||||||||||| | |||||||||| |||||| ||||||||    
T  45709853 gtttgtttatactttatagtattattcttataatttgtcctaaaaataatcaaata 45709798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 43631580 - 43631524
Alignment:
Q  1 atatttaattttatattaaatatat----gtttgtttatactttatagtattattca 53  Q
    |||||||||||||||||||||| ||    ||||||||||||||||||||||||||||    
T  43631580 atatttaattttatattaaataaatatgtgtttgtttatactttatagtattattca 43631524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 7154515 - 7154465
Alignment:
Q  1 atatttaattttatattaaatatatgtttgtttatactttatagtattatt 51  Q
    |||| ||||||||||||| ||||||||||||||||| ||| ||||||||||    
T  7154515 atatctaattttatattagatatatgtttgtttataatttttagtattatt 7154465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 25708032 - 25707996
Alignment:
Q  46 attattcatgtaatttgtccaaaaaatgatcaaatag 82  Q
    |||||||||||||||||||||||| ||||||||||||    
T  25708032 attattcatgtaatttgtccaaaacatgatcaaatag 25707996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 17316369 - 17316319
Alignment:
Q  31 tttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaata 81  Q
    |||||||||||||  |||||||||||||||||| |||||||| ||| ||||    
T  17316369 tttatactttataacattattcatgtaatttgttcaaaaaataatccaata 17316319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 35819365 - 35819417
Alignment:
Q  26 gtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaata 81  Q
    |||||||||||||||| |   ||||||||||||||||| |||||||| ||||||||    
T  35819365 gtttgtttatactttaca---ttattcatgtaatttgttcaaaaaataatcaaata 35819417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 35819316 - 35819344
Alignment:
Q  1 atatttaattttatattaaatatatgttt 29  Q
    |||||||||||||||||||||||||||||    
T  35819316 atatttaattttatattaaatatatgttt 35819344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 45709905 - 45709877
Alignment:
Q  1 atatttaattttatattaaatatatgttt 29  Q
    |||||||||||||||||||||||||||||    
T  45709905 atatttaattttatattaaatatatgttt 45709877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 22696319 - 22696243
Alignment:
Q  5 ttaattttatattaaatatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaata 81  Q
    |||||||||||||||||||| |||||||| |||||||||||||||| ||||||| ||||||||||||| ||||||||    
T  22696319 ttaattttatattaaatataagtttgtttgtactttatagtattatacatgtaacttgtccaaaaaataatcaaata 22696243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 22023758 - 22023834
Alignment:
Q  5 ttaattttatattaaatatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaata 81  Q
    |||||||||||||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||  ||||||||    
T  22023758 ttaattttatattaaatattcgtttgcttatactttatattattattcatgttatttgtccaaaaaactatcaaata 22023834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 13726430 - 13726490
Alignment:
Q  20 atatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaata 81  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  13726430 atataagtttgtttata-tttatagtattattcatgtaatttgtccaaaaaataatcaaata 13726490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 19835384 - 19835445
Alignment:
Q  20 atatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaata 81  Q
    ||||| |||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||    
T  19835384 atataagtttgtttatactttatagtattaatcatgtaatttctccaaaaaataatcaaata 19835445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 19423924 - 19423974
Alignment:
Q  20 atatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaa 70  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  19423924 atataagtttgtttatactttatagtattattcatgtaaattgtccaaaaa 19423974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 24375578 - 24375637
Alignment:
Q  20 atatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaat 80  Q
    ||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |||||||    
T  24375578 atataagtttgtttatagtttatagtattattcatgtaatttgt-caaaaaataatcaaat 24375637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 24237191 - 24237136
Alignment:
Q  26 gtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaata 81  Q
    ||||||||||||||||||  |||||||||||||||||| |||||||| ||||||||    
T  24237191 gtttgtttatactttataacattattcatgtaatttgttcaaaaaataatcaaata 24237136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 48826233 - 48826287
Alignment:
Q  26 gtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaat 80  Q
    ||||||||||||||||||  |||||||||||||||||| |||||||| |||||||    
T  48826233 gtttgtttatactttataccattattcatgtaatttgttcaaaaaataatcaaat 48826287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 2898503 - 2898555
Alignment:
Q  26 gtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaat 80  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||| |||||||    
T  2898503 gtttgtttatactttatagt-ttattcatgt-atttgtccaaaaaataatcaaat 2898555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 24236878 - 24236804
Alignment:
Q  1 atatttaattttatattaaatatatgtttgtt-----tatactttatagtattattcatgtaatttgtccaaaaa 70  Q
    |||||||||||||||||| |||||||||| ||     |||| |||||||||||||| |||||||||||| |||||    
T  24236878 atatttaattttatattagatatatgttttttttttatataatttatagtattatttatgtaatttgtcaaaaaa 24236804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 33649907 - 33649943
Alignment:
Q  46 attattcatgtaatttgtccaaaaaatgatcaaatag 82  Q
    ||||||||||||||| |||||||||||||||||||||    
T  33649907 attattcatgtaattggtccaaaaaatgatcaaatag 33649943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 43854324 - 43854376
Alignment:
Q  11 ttatattaaatatatgtttgtttatactttatagtattattcatgtaatttgt 63  Q
    ||||||| ||||  ||||||||||||||||||||||||||| ||| |||||||    
T  43854324 ttatatttaatacgtgtttgtttatactttatagtattatttatgaaatttgt 43854376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 158
Target Start/End: Original strand, 48826331 - 48826389
Alignment:
Q  103 atcccacttttagggtcggccactacacactg---tccgggattgactactatgcatca 158  Q
    |||||||||||||||||||||||||| |||||   |||| |||||||||||||| ||||    
T  48826331 atcccacttttagggtcggccactacgcactgctatccgagattgactactatggatca 48826389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 46660938 - 46660883
Alignment:
Q  27 tttgtttatactttatagtattattcatgtaatttgtccaa-aaaatgatcaaata 81  Q
    |||||||||  ||||  |||||||||||||||||||||||| ||||||||||||||    
T  46660938 tttgtttatggtttacggtattattcatgtaatttgtccaaaaaaatgatcaaata 46660883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 49600639 - 49600726
Alignment:
Q  1 atatttaattttatattaaatatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaa-tgatcaaatagtggtc 87  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||| | |||||||||| |||||| | ||||||||||||||    
T  49600639 atatttaattttatattagatatatgtttgtttataatttatagtattatttacgtaatttgtcaaaaaaagttatcaaatagtggtc 49600726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 54857388 - 54857469
Alignment:
Q  1 atatttaattttatattaaatatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaatag 82  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||| | |||||||||| ||||| | |||||||||    
T  54857388 atatttaattttatattagatatatgtttgtttataatttatagtattatttacgtaatttgtcaaaaaagttatcaaatag 54857469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 34559459 - 34559379
Alignment:
Q  1 atatttaattttatattaaatatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaata 81  Q
    |||||| ||||||||||||||||| |||||||||| ||||||||||||||| |||||||||| ||| ||||| ||||||||    
T  34559459 atatttcattttatattaaatataagtttgtttatgctttatagtattattgatgtaatttgaccataaaataatcaaata 34559379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 19238280 - 19238194
Alignment:
Q  1 atatttaattttatattaaatatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaatagtggtc 87  Q
    |||||||||||||||||| |||||||||||||| || |||||||||||||| || ||||||||||||||| | || |||||| ||||    
T  19238280 atatttaattttatattagatatatgtttgtttttaatttatagtattatttatataatttgtccaaaaagttatgaaatagcggtc 19238194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 3125230 - 3125291
Alignment:
Q  20 atatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaata 81  Q
    ||||| |||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||    
T  3125230 atataagtttgtttatacttcatagtattattcatgtaatttgtcaaaaaaataatcaaata 3125291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 8368019 - 8368106
Alignment:
Q  1 atatttaattttatattaaatatatg-tttgtttatactttatagtattattcatgtaatttgtcc-aaaaaatgatcaaatagtggt 86  Q
    |||||||||||||||||||||||| | ||| |||| ||||||||||||||| ||  |||||||||| |||||||||||||||| ||||    
T  8368019 atatttaattttatattaaatataagttttttttaaactttatagtattatccaaataatttgtccaaaaaaatgatcaaatattggt 8368106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 54857078 - 54857133
Alignment:
Q  26 gtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaata 81  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||    
T  54857078 gtttgtttatactttatactattattcatgtaatttgttcaaaaaataatcaaata 54857133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 51850514 - 51850453
Alignment:
Q  20 atatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaata 81  Q
    ||||| |||||| ||| ||||||| |||||||||||||||||||||||||||| ||||||||    
T  51850514 atataagtttgtctattctttataatattattcatgtaatttgtccaaaaaataatcaaata 51850453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 31 - 132
Target Start/End: Complemental strand, 11388909 - 11388809
Alignment:
Q  31 tttatactttatagtattattcatgtaatttgtccaa-aaaatgatcaaatagtggtcttcctgctatacgccatcccacttttagggtcggccactaca 129  Q
    ||||||||||| ||||||||||||||||||||||||| ||||| |||||||| |||  |  |  |||||| | ||||||||||| ||||||||| |||||    
T  11388909 tttatactttagagtattattcatgtaatttgtccaaaaaaataatcaaatattgg--tgaccactatacactatcccacttttggggtcggccgctaca 11388812  T
Q  130 cac 132  Q
    |||    
T  11388811 cac 11388809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 12049871 - 12049932
Alignment:
Q  20 atatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaata 81  Q
    ||||| ||||||||||||||||||  |||||||||||||| ||| ||||| || ||||||||    
T  12049871 atataagtttgtttatactttatatcattattcatgtaatatgttcaaaacataatcaaata 12049932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 52643441 - 52643524
Alignment:
Q  1 atatttaattttatattaaatatatgtttgtttatactttatagtattattcat---gtaatttgtccaaaaaatgatcaaata 81  Q
    |||||||||||||||||||||| |  ||||||||| ||||| |||||||||  |   ||||| |||||||||||| ||||||||    
T  52643441 atatttaattttatattaaatagaattttgtttatcctttacagtattattattagtgtaatatgtccaaaaaatcatcaaata 52643524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 30484942 - 30484872
Alignment:
Q  1 atatttaattttatattaaatatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaa 71  Q
    |||||||||||||||||||||||| || | || |||||||||||||||||||||||||||||| |||||||    
T  30484942 atatttaattttatattaaatataagtgttttaatactttatagtattattcatgtaatttgtacaaaaaa 30484872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 31203671 - 31203741
Alignment:
Q  11 ttatattaaatatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaata 81  Q
    |||||||||||||| |||||||||||  ||||||||||||| |||||||||||||||||||| ||||||||    
T  31203671 ttatattaaatataagtttgtttatatcttatagtattatttatgtaatttgtccaaaaaataatcaaata 31203741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 41654476 - 41654546
Alignment:
Q  1 atatttaattttatattaaatatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaa 71  Q
    |||||||||||||||||| ||||||||||||||||| |||||| |||||||   |||||||||| ||||||    
T  41654476 atatttaattttatattagatatatgtttgtttataatttatactattattttcgtaatttgtcaaaaaaa 41654546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 5171095 - 5171035
Alignment:
Q  11 ttatattaaatatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaa 71  Q
    ||||||| |||||| |||||||||||||| |||||||||||||||| |||||||| |||||    
T  5171095 ttatatttaatatacgtttgtttatacttcatagtattattcatgttatttgtcccaaaaa 5171035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 17120354 - 17120432
Alignment:
Q  1 atatttaattttatattaaatatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaatag 82  Q
    |||||||||||||||||||||||||| || |||||||  | ||||||||||| |||||||||| | | ||||||||||||||    
T  17120354 atatttaattttatattaaatatatgattttttatac--tctagtattattcgtgtaatttgt-ctagaaatgatcaaatag 17120432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 26007716 - 26007678
Alignment:
Q  4 tttaattttatattaaatatatgtttgtttatactttat 42  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  26007716 tttaattttattttaaatatatgtttgtttatattttat 26007678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 10558 - 10497
Alignment:
Q  20 atatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaata 81  Q
    ||||| |||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||    
T  10558 atataggtttgtttatactttatagtattattgatgttatttgtccaaaaaataatcaaata 10497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1594 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1594
Description:

Target: scaffold1594; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 825 - 919
Alignment:
Q  5 ttaattttatattaaatatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaatagtggtcttcctgctatac 99  Q
    |||||||||||||| |||||||||||||| |||||||||  |   ||||| ||| |||||| |||| |||||||||||| ||| |||||||||||    
T  825 ttaattttatattatatatatgtttgtttttactttataacagagttcatataacttgtcccaaaattgatcaaatagttgtcatcctgctatac 919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1549 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1549
Description:

Target: scaffold1549; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 771 - 677
Alignment:
Q  5 ttaattttatattaaatatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaatagtggtcttcctgctatac 99  Q
    |||||||||||||| |||||||||||||| |||||||||  |   ||||| ||| |||||| |||| |||||||||||| ||| |||||||||||    
T  771 ttaattttatattatatatatgtttgtttttactttataacagagttcatataacttgtcccaaaattgatcaaatagttgtcatcctgctatac 677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 16677 - 16631
Alignment:
Q  35 tactttatagtattattcatgtaatttgtccaaaaaatgatcaaata 81  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  16677 tactttatagtattattcatgtaatttgtccaaaaaataatcaaata 16631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 15584697 - 15584635
Alignment:
Q  7 aattttatattaaatatatgtttgtttatactttatagtattattcatgtaatttgtccaaaa 69  Q
    |||||||||||||||| |  |||||||||||||||| |||||||||||||||||| |||||||    
T  15584697 aattttatattaaatacagttttgtttatactttatggtattattcatgtaatttttccaaaa 15584635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 31462511 - 31462450
Alignment:
Q  20 atatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaata 81  Q
    ||||| |||||||||||| ||||||||||||||||||| |||||| ||||||| ||||||||    
T  31462511 atataagtttgtttataccttatagtattattcatgtagtttgtcaaaaaaataatcaaata 31462450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 313228 - 313171
Alignment:
Q  154 catcagaaacaaacctaacttgttgaacaaat-aacgaatatgtaagttgacagcagt 210  Q
    |||||||||||||| ||||||| ||||||||| ||| || ||||||||| ||||||||    
T  313228 catcagaaacaaacttaacttgctgaacaaatcaacaaagatgtaagttcacagcagt 313171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 10692688 - 10692639
Alignment:
Q  38 tttatagtattattcatgtaatttgtccaaaaaatgatcaaatagtggtc 87  Q
    |||||||| |||||||||||||||| |||||| || |||| |||||||||    
T  10692688 tttatagtcttattcatgtaatttgcccaaaatattatcatatagtggtc 10692639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 30798 - 30737
Alignment:
Q  20 atatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaata 81  Q
    ||||| |||||||||| |||||| | ||||||||| ||||||||||||||||||||||||||    
T  30798 atataagtttgtttatgctttatggaattattcatataatttgtccaaaaaatgatcaaata 30737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 6104 - 6044
Alignment:
Q  26 gtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaatagtggt 86  Q
    |||||||||||||| |||| |||||||||||||||| |||||||||| |||||||| ||||    
T  6104 gtttgtttatacttcatagcattattcatgtaatttttccaaaaaataatcaaatattggt 6044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 228065 - 228130
Alignment:
Q  4 tttaattttatattaaatatatg-tttgtttatactttatagtattattcatgtaatttgtccaaaaaat 72  Q
    ||||||||||||||||||||||| |||||||||||||     |||||||||||||| |||||||||||||    
T  228065 tttaattttatattaaatatatggtttgtttatactta----tattattcatgtaacttgtccaaaaaat 228130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 12210 - 12284
Alignment:
Q  38 tttatagtattattcatgtaatttgtccaaaaaatgatcaaatagtggtcttcctgctatacgccatcccactttt 113  Q
    ||||| |||| |||||||||||||||||||||| | ||||||||| |||| |||  ||| |||| |||||||||||    
T  12210 tttatggtatcattcatgtaatttgtccaaaaagttatcaaatagcggtcatcccacta-acgctatcccactttt 12284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University