View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2642_high_4 (Length: 389)

Name: NF2642_high_4
Description: NF2642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2642_high_4
NF2642_high_4
[»] chr8 (4 HSPs)
chr8 (19-233)||(32900186-32900389)
chr8 (225-379)||(32901636-32901790)
chr8 (314-368)||(33444633-33444687)
chr8 (311-351)||(12650156-12650196)
[»] chr1 (9 HSPs)
chr1 (314-363)||(31806763-31806812)
chr1 (308-363)||(11014442-11014497)
chr1 (303-368)||(29091677-29091742)
chr1 (314-363)||(37336459-37336508)
chr1 (308-363)||(20504990-20505045)
chr1 (306-357)||(52699465-52699516)
chr1 (314-368)||(1007758-1007812)
chr1 (314-368)||(13653862-13653916)
chr1 (314-351)||(24116344-24116381)
[»] chr2 (5 HSPs)
chr2 (304-368)||(25455034-25455098)
chr2 (306-357)||(5002836-5002887)
chr2 (306-357)||(45694209-45694260)
chr2 (307-368)||(8868664-8868724)
chr2 (314-351)||(39819723-39819760)
[»] chr5 (3 HSPs)
chr5 (318-372)||(6930650-6930704)
chr5 (308-368)||(15200547-15200607)
chr5 (314-368)||(43346902-43346956)
[»] chr3 (3 HSPs)
chr3 (314-362)||(31435930-31435978)
chr3 (322-372)||(38140379-38140429)
chr3 (313-351)||(40584627-40584665)
[»] chr6 (2 HSPs)
chr6 (304-363)||(3869520-3869579)
chr6 (313-357)||(16968946-16968990)
[»] scaffold0006 (1 HSPs)
scaffold0006 (314-368)||(143623-143677)
[»] chr7 (4 HSPs)
chr7 (314-368)||(41684029-41684083)
chr7 (304-333)||(22156061-22156090)
chr7 (304-333)||(22211976-22212005)
chr7 (314-362)||(41632371-41632419)
[»] chr4 (2 HSPs)
chr4 (308-357)||(7258987-7259036)
chr4 (314-351)||(26165395-26165432)


Alignment Details
Target: chr8 (Bit Score: 144; Significance: 1e-75; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 32900186 - 32900389
Alignment:
Q  19 gaactccgaattaccaatgtacattttcctttagaaattgctaggagggttaaaccnnnnnnntgatgacaattttttatacagacgtaataccttagtc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||| ||||    
T  32900186 gaactccgaattaccaatgtacattttcctttagaaattgctaggagggttaaaccaaaaaaatgatgacaatttttgatacagacgtaatacctcagtc 32900285  T
Q  119 aaaatagagtatgataagagaatgaaaagtttacctctaagaaaaaagttacatatgaaaggaaatgcaacttacaaatattgttcaagctattaagcta 218  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||    
T  32900286 aaaatagagtatgataaaagaatgaaaagtttacctctaagaaaaaagttacatatgaaaggaaatgcaacttacaa-----------gctattaagcta 32900374  T
Q  219 tatataaactttcaa 233  Q
    |||||||||||||||    
T  32900375 tatataaactttcaa 32900389  T

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Target: chr8; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 225 - 379
Target Start/End: Original strand, 32901636 - 32901790
Alignment:
Q  225 aactttcaatgcacaaaaacttgggagtctatacagataaaaaatgttatgccgaaacaaacacctcgtcatttagtcttaagggtgcatttgtttcaag 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||    
T  32901636 aactttcaatgcacaaaaacttgggagtctatacagataaaaaatgttatgccgaaacaaacaccacgtcatttagttttaagagtgcatttgtttcaag 32901735  T
Q  325 ttatatttgtagattactgagaataaattgatataaataaatatatattcctatg 379  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  32901736 ttatatttgtagatttctgagaataaattgatataaataaatatatattcttatg 32901790  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 314 - 368
Target Start/End: Original strand, 33444633 - 33444687
Alignment:
Q  314 tttgtttcaagttatatttgtagattactgagaataaattgatataaataaatat 368  Q
    ||||||||||||||||||||| |||| ||||||||||| ||||| ||||| ||||    
T  33444633 tttgtttcaagttatatttgttgattcctgagaataaaatgataaaaatatatat 33444687  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 351
Target Start/End: Complemental strand, 12650196 - 12650156
Alignment:
Q  311 gcatttgtttcaagttatatttgtagattactgagaataaa 351  Q
    |||||||||||||||||||||||||| ||| ||| ||||||    
T  12650196 gcatttgtttcaagttatatttgtaggttattgaaaataaa 12650156  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 31806763 - 31806812
Alignment:
Q  314 tttgtttcaagttatatttgtagattactgagaataaattgatataaata 363  Q
    |||||||||||||||||||||||||| ||||||||||| ||||| |||||    
T  31806763 tttgtttcaagttatatttgtagattcctgagaataaaatgatagaaata 31806812  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 363
Target Start/End: Original strand, 11014442 - 11014497
Alignment:
Q  308 ggtgcatttgtttcaagttatatttgtagattactgagaataaattgatataaata 363  Q
    ||||||||||||||||||||||| |||||||| ||| ||||||| ||||| |||||    
T  11014442 ggtgcatttgtttcaagttatatatgtagattcctgggaataaaatgatagaaata 11014497  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 29091742 - 29091677
Alignment:
Q  303 ttaagggtgcatttgtttcaagttatatttgtagattactgagaataaattgatataaataaatat 368  Q
    |||||||||  ||||||||||||||||||||| |||| |||| |||||| ||||| ||||| ||||    
T  29091742 ttaagggtgtgtttgtttcaagttatatttgttgattcctgataataaaatgataaaaatatatat 29091677  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 37336459 - 37336508
Alignment:
Q  314 tttgtttcaagttatatttgtagattactgagaataaattgatataaata 363  Q
    ||||||||||||||||||||||||||  ||| |||||| |||||||||||    
T  37336459 tttgtttcaagttatatttgtagattcatgataataaaatgatataaata 37336508  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 363
Target Start/End: Original strand, 20504990 - 20505045
Alignment:
Q  308 ggtgcatttgtttcaagttatatttgtagattactgagaataaattgatataaata 363  Q
    ||||| ||||||| || ||||||||||||||| ||||||||||| ||||| |||||    
T  20504990 ggtgcgtttgttttaaattatatttgtagatttctgagaataaaatgatagaaata 20505045  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 357
Target Start/End: Original strand, 52699465 - 52699516
Alignment:
Q  306 agggtgcatttgtttcaagttatatttgtagattactgagaataaattgata 357  Q
    ||||||| |||||||||||||||||| ||||||| ||| ||||||| |||||    
T  52699465 agggtgcgtttgtttcaagttatattcgtagattcctgggaataaaatgata 52699516  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 368
Target Start/End: Complemental strand, 1007812 - 1007758
Alignment:
Q  314 tttgtttcaagttatatttgtagattactgagaataaattgatataaataaatat 368  Q
    ||||||||||||||||||||| |||| | ||||||||| |||||| |||| ||||    
T  1007812 tttgtttcaagttatatttgttgattcccgagaataaaatgatatgaatatatat 1007758  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 368
Target Start/End: Complemental strand, 13653916 - 13653862
Alignment:
Q  314 tttgtttcaagttatatttgtagattactgagaataaattgatataaataaatat 368  Q
    |||||||||||||| |||||| |||| ||||||||||| ||||| ||||| ||||    
T  13653916 tttgtttcaagttaaatttgttgattcctgagaataaaatgatagaaatatatat 13653862  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 351
Target Start/End: Original strand, 24116344 - 24116381
Alignment:
Q  314 tttgtttcaagttatatttgtagattactgagaataaa 351  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  24116344 tttgtttcaggttatatttgtagattcctgagaataaa 24116381  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 304 - 368
Target Start/End: Complemental strand, 25455098 - 25455034
Alignment:
Q  304 taagggtgcatttgtttcaagttatatttgtagattactgagaataaattgatataaataaatat 368  Q
    ||||||||  |||||||||||||||||||||||||| ||||||||||| | ||| ||||| ||||    
T  25455098 taagggtgtgtttgtttcaagttatatttgtagattcctgagaataaaatcataaaaatacatat 25455034  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 306 - 357
Target Start/End: Original strand, 5002836 - 5002887
Alignment:
Q  306 agggtgcatttgtttcaagttatatttgtagattactgagaataaattgata 357  Q
    ||||||| |||||||||||||||||||||||||| || |||||||| |||||    
T  5002836 agggtgcgtttgtttcaagttatatttgtagatttctaagaataaaatgata 5002887  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 357
Target Start/End: Complemental strand, 45694260 - 45694209
Alignment:
Q  306 agggtgcatttgtttcaagttatatttgtagattactgagaataaattgata 357  Q
    ||||||| |||||||||||||||||| ||||||| ||| ||||||| |||||    
T  45694260 agggtgcgtttgtttcaagttatattcgtagatttctgggaataaaatgata 45694209  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 368
Target Start/End: Original strand, 8868664 - 8868724
Alignment:
Q  307 gggtgcatttgtttcaagttatatttgtagattactgagaataaattgatataaataaatat 368  Q
    |||||| ||||||||||||||| |||||||||| ||  ||||||||||||| ||||| ||||    
T  8868664 gggtgcgtttgtttcaagttat-tttgtagattcctaggaataaattgatagaaatacatat 8868724  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 351
Target Start/End: Complemental strand, 39819760 - 39819723
Alignment:
Q  314 tttgtttcaagttatatttgtagattactgagaataaa 351  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  39819760 tttgtttcaagttatatttgtagattcctgaaaataaa 39819723  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 318 - 372
Target Start/End: Complemental strand, 6930704 - 6930650
Alignment:
Q  318 tttcaagttatatttgtagattactgagaataaattgatataaataaatatatat 372  Q
    ||||||||||||||||| |||| ||||||||||| ||||| ||||| ||||||||    
T  6930704 tttcaagttatatttgttgattcctgagaataaaatgatagaaatatatatatat 6930650  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 368
Target Start/End: Original strand, 15200547 - 15200607
Alignment:
Q  308 ggtgcatttgtttcaagttatatttgtagattactgagaataaattgatataaataaatat 368  Q
    ||||| ||||||||||||||||||| ||||||  ||| |||||| ||||||||||| ||||    
T  15200547 ggtgcgtttgtttcaagttatatttatagatttttgaaaataaaatgatataaatatatat 15200607  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 368
Target Start/End: Original strand, 43346902 - 43346956
Alignment:
Q  314 tttgtttcaagttatatttgtagattactgagaataaattgatataaataaatat 368  Q
    |||||||||||||||||||||||||| |||| |||||| | ||| ||||| ||||    
T  43346902 tttgtttcaagttatatttgtagattcctgaaaataaaatcataaaaatacatat 43346956  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 362
Target Start/End: Original strand, 31435930 - 31435978
Alignment:
Q  314 tttgtttcaagttatatttgtagattactgagaataaattgatataaat 362  Q
    ||||||||||||||||||||| |||| ||||||||||| ||||| ||||    
T  31435930 tttgtttcaagttatatttgttgattcctgagaataaaatgatagaaat 31435978  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 372
Target Start/End: Original strand, 38140379 - 38140429
Alignment:
Q  322 aagttatatttgtagattactgagaataaattgatataaataaatatatat 372  Q
    ||||||||||||||||||  |||||||||| ||||||| ||| ||||||||    
T  38140379 aagttatatttgtagattcatgagaataaaatgatatatatatatatatat 38140429  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Complemental strand, 40584665 - 40584627
Alignment:
Q  313 atttgtttcaagttatatttgtagattactgagaataaa 351  Q
    |||||||| |||||||||||||||||| |||||||||||    
T  40584665 atttgttttaagttatatttgtagattcctgagaataaa 40584627  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 363
Target Start/End: Complemental strand, 3869579 - 3869520
Alignment:
Q  304 taagggtgcatttgtttcaagttatatttgtagattactgagaataaattgatataaata 363  Q
    ||||||||  ||||||||||||||| |||||||||| ||| ||||||| ||||| |||||    
T  3869579 taagggtgtgtttgtttcaagttatttttgtagatttctgggaataaaatgatagaaata 3869520  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 357
Target Start/End: Complemental strand, 16968990 - 16968946
Alignment:
Q  313 atttgtttcaagttatatttgtagattactgagaataaattgata 357  Q
    ||||||||||||||||| |||| |||| ||||||||||| |||||    
T  16968990 atttgtttcaagttataattgttgattcctgagaataaaatgata 16968946  T

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Target: scaffold0006 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 368
Target Start/End: Complemental strand, 143677 - 143623
Alignment:
Q  314 tttgtttcaagttatatttgtagattactgagaataaattgatataaataaatat 368  Q
    |||||||||||||| |||||| |||| ||||||||||| ||||| ||||| ||||    
T  143677 tttgtttcaagttaaatttgttgattcctgagaataaaatgatagaaatatatat 143623  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 368
Target Start/End: Original strand, 41684029 - 41684083
Alignment:
Q  314 tttgtttcaagttatatttgtagattactgagaataaattgatataaataaatat 368  Q
    ||||||||||||||||||||| |||| ||||||||||  ||||| ||||| ||||    
T  41684029 tttgtttcaagttatatttgttgattcctgagaataatatgatagaaatatatat 41684083  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 333
Target Start/End: Original strand, 22156061 - 22156090
Alignment:
Q  304 taagggtgcatttgtttcaagttatatttg 333  Q
    ||||||||||||||||||||||||||||||    
T  22156061 taagggtgcatttgtttcaagttatatttg 22156090  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 333
Target Start/End: Original strand, 22211976 - 22212005
Alignment:
Q  304 taagggtgcatttgtttcaagttatatttg 333  Q
    ||||||||||||||||||||||||||||||    
T  22211976 taagggtgcatttgtttcaagttatatttg 22212005  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 362
Target Start/End: Original strand, 41632371 - 41632419
Alignment:
Q  314 tttgtttcaagttatatttgtagattactgagaataaattgatataaat 362  Q
    |||||||||||||||| |||| |||| ||||||||||| ||||| ||||    
T  41632371 tttgtttcaagttataattgttgattcctgagaataaaatgatagaaat 41632419  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 357
Target Start/End: Complemental strand, 7259036 - 7258987
Alignment:
Q  308 ggtgcatttgtttcaagttatatttgtagattactgagaataaattgata 357  Q
    ||||| |||||||||||||||||| ||||||| || |||||||| |||||    
T  7259036 ggtgcgtttgtttcaagttatattggtagattccttagaataaaatgata 7258987  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 351
Target Start/End: Complemental strand, 26165432 - 26165395
Alignment:
Q  314 tttgtttcaagttatatttgtagattactgagaataaa 351  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  26165432 tttgtttcatgttatatttgtagattcctgagaataaa 26165395  T

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