View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2642_high_5 (Length: 388)
Name: NF2642_high_5
Description: NF2642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2642_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 17857424 - 17857051
Alignment:
| Q |
1 |
ttggaaatgcagagcaggttagaaaaatagcgagcaggaccagcattctcgaaagatcttcacagcagttggttggttttttctcttgtttcaatctaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17857424 |
ttggaaatgcagagcaggttagaaaaatagcgagcaggaccagcattctcaaaagatcttcacagcagttggttggttttttctcttgtttcaatctaag |
17857325 |
T |
|
| Q |
101 |
ttttaagaattttgtgatagagagccttgtattttgtacagtcaaactactacataaattttggaaagcaattcaatgaaacagaatcatctaaaaagac |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17857324 |
ttttaagagttttgtgatagagagccttgtattttgtacagtcaaactactacataaattttggaaagcaattcaatgaaacagaatcatctaaaaagac |
17857225 |
T |
|
| Q |
201 |
agtatagatgataatctccaacag--aaaatgttttcttttagtttcattcagggaaaggaaagatgtattttgcactagtattcagtttcggcgagatt |
298 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
17857224 |
agtatagatgatgatctccaacagaaaaaatgttttcttttagtatcattcagggaaaggaaagatgta-tttgcactagtattcagtttcagcgagatt |
17857126 |
T |
|
| Q |
299 |
atagtgaaattcttttgtaatgtcatctttcggaggaattcaaatctaac-aaccttccgtatcttcggtctttg |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17857125 |
atagtgaaattcttttgtaatgtcatctttcggaggaattcaaatctaacaaaccttccgtatcttcggtctttg |
17857051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University