View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2642_low_3 (Length: 397)
Name: NF2642_low_3
Description: NF2642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2642_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 4 - 206
Target Start/End: Original strand, 19077154 - 19077356
Alignment:
| Q |
4 |
attggagctttgggtggtttgataagaactttgcaggacttgagcttttatttaaacatataaaggcatagtccagaaatagaggaagaaaatccaaaat |
103 |
Q |
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| T |
19077154 |
attggagctttgggtggtttgataagaattttgcagaacttgagcttttatttaaacatataaaggcatagtccagaaatagaggaagaaaatccaaaat |
19077253 |
T |
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| Q |
104 |
agaaattgtagggcttagttatgttgatagattgatggagtacaatgataagttatatcccatgagtttaggcgtagaagctgcaattgattaacctaag |
203 |
Q |
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| T |
19077254 |
agaaattgtagggcttagttatgttgatagattgatggagtacaatgatgagttatatccaatgagtttaggcgtagaagctgcaattgattaacctaag |
19077353 |
T |
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| Q |
204 |
gtg |
206 |
Q |
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||| |
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| T |
19077354 |
gtg |
19077356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 241 - 386
Target Start/End: Original strand, 19077391 - 19077536
Alignment:
| Q |
241 |
gatatcctatgccaagattattatggaatcattggagagattatcatgggagattgattgatcagaatttcctaaaagacgttaacttatattaaagtga |
340 |
Q |
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| T |
19077391 |
gatatcctatgccaagattattatggaatcattggagagattatcatgggagattgattgatcagaatttcgtagaagacgttaacttatattaaagtga |
19077490 |
T |
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| Q |
341 |
agtgatataaaaggtgattaaggaatcgtcatatatggttgttcat |
386 |
Q |
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| T |
19077491 |
agtgatataaaaggtgattaaggaatcgccatgtctggttgttcat |
19077536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 241 - 386
Target Start/End: Original strand, 19079116 - 19079261
Alignment:
| Q |
241 |
gatatcctatgccaagattattatggaatcattggagagattatcatgggagattgattgatcagaatttcctaaaagacgttaacttatattaaagtga |
340 |
Q |
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| T |
19079116 |
gatatcctatgccaagattattatggaatcattggagagattatcatgggagattgattgatcaaaatttcgtagaagacgttaacttatattaaagtga |
19079215 |
T |
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| Q |
341 |
agtgatataaaaggtgattaaggaatcgtcatatatggttgttcat |
386 |
Q |
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| T |
19079216 |
agtgatgtaaaaggtgattaaggaatcgtcatatttgattgttcat |
19079261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 45 - 157
Target Start/End: Original strand, 19078896 - 19079008
Alignment:
| Q |
45 |
gagcttttatttaaacatataaaggcatagtccagaaatagaggaagaaaatccaaaatagaaattgtagggcttagttatgttgatagattgatggagt |
144 |
Q |
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| T |
19078896 |
gagcctttatttaaacatataaaggcatagtccagaaatagtggaagaaaatccaaaatagaaattgtagggcttagttatgttgatagattgatggagt |
19078995 |
T |
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| Q |
145 |
acaatgataagtt |
157 |
Q |
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|||||||| |||| |
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| T |
19078996 |
acaatgatgagtt |
19079008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 50 - 206
Target Start/End: Complemental strand, 19078247 - 19078091
Alignment:
| Q |
50 |
tttatttaaacatataaaggcatagtccagaaatagaggaagaaaatccaaaatagaaattgtagggcttagttatgttgatagattgatggagtacaat |
149 |
Q |
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||||| ||||| ||||||||||| |||| ||||||||||||||||| |||||||||||| | | | ||| |||| |||||| ||||||||||| || |
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| T |
19078247 |
tttatctaaaccgataaaggcatattccaaaaatagaggaagaaaatataaaatagaaattaaatgcataagtcatgtagatagagtgatggagtacgat |
19078148 |
T |
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| Q |
150 |
gataagttatatcccatgagtttaggcgtagaagctgcaattgattaacctaaggtg |
206 |
Q |
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| T |
19078147 |
gatgagttacatccaatgattttaggttaagaagctccaattgacttacctaaggtg |
19078091 |
T |
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