View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2642_low_8 (Length: 298)
Name: NF2642_low_8
Description: NF2642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2642_low_8 |
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| [»] scaffold1594 (1 HSPs) |
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| [»] scaffold1549 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 33858537 - 33858253
Alignment:
| Q |
1 |
gaaataaatatagatataataaggtattattaacctggaaaaccatcgaaacatagtaatcaatagcgctatagcggcaagaaaccgctacggaatctat |
100 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33858537 |
gaaataaatatagatatactaaggtattattagcctggaaaaccatcgaaacatagtaatcaatagcgctatagcggcaagaaaccgctacggaatctat |
33858438 |
T |
|
| Q |
101 |
cttcctatgttctttgttctcttttttagttcctctgttctttggtcttttggattaatgttttgattaagacttgtgaaattttgttggagacttgaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33858437 |
cttcctatgttctttgttctcttttttagttcctctgttctttggtcttttggattaatgttttgattaagacttgtgaaattttgttggagacttgaaa |
33858338 |
T |
|
| Q |
201 |
gctctcgtaaacttatttatttccctgacatttgttggtattaggatttgaatgtaatgctttgtggatgttgagtgttttgatg |
285 |
Q |
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| T |
33858337 |
gctctggtaaacttatttatttccctgacatttgttggtatttggatttgaatgtaatgttttgtggatgttgagtgttttgatg |
33858253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 33922386 - 33922670
Alignment:
| Q |
1 |
gaaataaatatagatataataaggtattattaacctggaaaaccatcgaaacatagtaatcaatagcgctatagcggcaagaaaccgctacggaatctat |
100 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33922386 |
gaaataaatatagatatactaaggtattattagcctggaaaaccatcgaaacatagtaatcaatagcgctatagcggcaagaaaccgctacggaatctat |
33922485 |
T |
|
| Q |
101 |
cttcctatgttctttgttctcttttttagttcctctgttctttggtcttttggattaatgttttgattaagacttgtgaaattttgttggagacttgaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33922486 |
cttcctatgttctttgttctcttttttagttcctctgttctttggtcttttggattaatgttttgattaagacttgtgaaattttgttggagacttgaaa |
33922585 |
T |
|
| Q |
201 |
gctctcgtaaacttatttatttccctgacatttgttggtattaggatttgaatgtaatgctttgtggatgttgagtgttttgatg |
285 |
Q |
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| T |
33922586 |
gctctggtaaacttatttatttccctgacatttgttggtatttggatttgaatgtaatgttttgtggatgttgagtgttttgatg |
33922670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 96 - 283
Target Start/End: Complemental strand, 33185295 - 33185110
Alignment:
| Q |
96 |
tctatcttcctatgttctttgttctcttttttagttcctctgttctttggtcttttggatt-aatgttttgattaagacttgtgaaattttgttggagac |
194 |
Q |
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||||||||||| | |||||||||||| || | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33185295 |
tctatcttcctctattctttgttctccttat-agttcctctgttctttggtcttttggatttaatgttttgattaagacttgtgaaattttgttggagac |
33185197 |
T |
|
| Q |
195 |
ttgaaagctctcgtaaacttatttatttccctgacatttgttggtattaggatttgaatgtaatgctttgtggatgttgagtgttttga |
283 |
Q |
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| T |
33185196 |
ttgaaagctttcataagtttatttatttccttgacattt-ttggtatttggatttgaatgtaatgttttgtggat-ttgagtgttttga |
33185110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 200
Target Start/End: Complemental strand, 31311308 - 31311265
Alignment:
| Q |
157 |
aatgttttgattaagacttgtgaaattttgttggagacttgaaa |
200 |
Q |
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| T |
31311308 |
aatgttttgattaagacttgtggatttttgttggagacttgaaa |
31311265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 110 - 284
Target Start/End: Complemental strand, 30213242 - 30213067
Alignment:
| Q |
110 |
ttctttgttctcttttttagttcctctgttctttggtcttttggatt-aatgttttgattaagacttgtgaaattttgttggagacttgaaagctctcgt |
208 |
Q |
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|
||||||||| ||||||| ||||||||||| ||||| ||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||| || | |
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| T |
30213242 |
ttctttgttttcttttt-agttcctctgtcctttgttcttttggatttaatgttttaactaagacttgtgaaattttgttggagacttgaaagctttcat |
30213144 |
T |
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| Q |
209 |
aaacttatttatttccctgacatttgttggtattaggatttgaatgtaatgctttgtggatg-ttgagtgttttgat |
284 |
Q |
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|| ||||||||| ||| |||||||| |||||||| |||||||||||||||| | |||||||| |||||||||||||| |
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| T |
30213143 |
aagcttatttatatccttgacatttattggtatttggatttgaatgtaatgttctgtggatgtttgagtgttttgat |
30213067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 190 - 284
Target Start/End: Complemental strand, 43631705 - 43631610
Alignment:
| Q |
190 |
gagacttgaaagctctcgtaaacttatttatttccctgacatttgttggtattaggatttgaatgtaatgctttgtggatg-ttgagtgttttgat |
284 |
Q |
| |
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|||||||||||||| || |||||||| ||||||| ||||||||||||||||| |||||||||| ||||| | ||||||| |||||||||||||| |
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| T |
43631705 |
gagacttgaaagctttcataaacttaattatttctttgacatttgttggtattcggatttgaatctaatgttccgtggatgtttgagtgttttgat |
43631610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 176
Target Start/End: Complemental strand, 43631778 - 43631698
Alignment:
| Q |
97 |
ctatcttcctat-gttctttgttctcttttttagttcctctgttctttggtcttttggatt-aatgttttgattaagacttg |
176 |
Q |
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|||||||||| | |||||||||||||||||| | ||| | |||||||| ||||||||||| |||||||||||| ||||||| |
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| T |
43631778 |
ctatcttcctctagttctttgttctcttttt-atttcatatgttcttttttcttttggatttaatgttttgattgagacttg |
43631698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1594 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold1594
Description:
Target: scaffold1594; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 631 - 699
Alignment:
| Q |
155 |
ttaatgttttgattaagacttgtgaaattttgttggagacttgaaagctctcgtaaacttatttatttc |
223 |
Q |
| |
|
|||||||||| ||||||||||||||||||| | | |||||||||||||| || ||||||| | |||||| |
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| T |
631 |
ttaatgttttaattaagacttgtgaaatttggctagagacttgaaagctttcataaacttctctatttc |
699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1549 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold1549
Description:
Target: scaffold1549; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 965 - 897
Alignment:
| Q |
155 |
ttaatgttttgattaagacttgtgaaattttgttggagacttgaaagctctcgtaaacttatttatttc |
223 |
Q |
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|||||||||| ||||||||||||||||||| | | |||||||||||||| || ||||||| | |||||| |
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| T |
965 |
ttaatgttttaattaagacttgtgaaatttggctagagacttgaaagctttcataaacttctctatttc |
897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 43853990 - 43854034
Alignment:
| Q |
95 |
atctatcttcctatgttctttgttctcttttttagttcctctgttc |
140 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||| |||| |
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| T |
43853990 |
atctatcttcctctgttctttgttctc-tttttagttcctcggttc |
43854034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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