View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2643-Insertion-1 (Length: 238)
Name: NF2643-Insertion-1
Description: NF2643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2643-Insertion-1 |
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| [»] chr6 (6 HSPs) |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 238
Target Start/End: Complemental strand, 7806591 - 7806363
Alignment:
| Q |
10 |
ttcatctcactttgcctttccacaccttaaagcatgttattttcgtctcgcaaacccttgttgttctcaaacttcaaagtttatatgttggaaaggatac |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7806591 |
ttcatctcactttgcctttccacaccttaaagcatgttattttcgtctcgcaaactcttgttgttctcaaacttcaaagtttatatgttggaaaggatac |
7806492 |
T |
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| Q |
110 |
ttcaagtgttcatcttccatcactcaaaaccctaaatctgacatcagtttcttttgaaaatcgggatgattacataaattttctcaatgcttgtcctatc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7806491 |
ttcaagtgttcatcttccatcactcaaaaccctaaatctgacatcagtttcttttgaaaatcgggatgattacataaattttctcaatgcttgtcctatc |
7806392 |
T |
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| Q |
210 |
ctagaagatttgcatgctgaacttatcta |
238 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
7806391 |
ctagaagatttgcatgctgaacttatcta |
7806363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 85 - 230
Target Start/End: Original strand, 10415842 - 10415987
Alignment:
| Q |
85 |
aaagtttatatgttggaaaggatacttcaagtgttcatcttccatcactcaaaaccctaaatctgacatcagtttcttttgaaaatcgggatgattacat |
184 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||| |||||||||||||||||||||| |||||||||| |
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| T |
10415842 |
aaagtgtatatgttggaaaggatacttcatgtgttcatcttctgtcactcaaaaccctaagcttgatatcagtttcttttgaaaatcggaatgattacat |
10415941 |
T |
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| Q |
185 |
aaattttctcaatgcttgtcctatcctagaagatttgcatgctgaa |
230 |
Q |
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| T |
10415942 |
aaattttcttcatgcttgtcctatcctagaagatttgcatgctgaa |
10415987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 47 - 227
Target Start/End: Complemental strand, 3255621 - 3255441
Alignment:
| Q |
47 |
tattttcgtctcgcaaacccttgttgttctcaaacttcaaagtttatatgttggaaaggatacttcaagtgttcatcttccatcactcaaaaccctaaat |
146 |
Q |
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||||||| ||| |||||||||||||||||||||||| |||| ||| |||||||| ||| ||||| ||||| ||||||||||||| |||||||||| | |
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| T |
3255621 |
tattttcatcttccaaacccttgttgttctcaaacttgaaaggttaaatgttggagcggacacttcttgtgttgatcttccatcactaaaaaccctaact |
3255522 |
T |
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| Q |
147 |
ctgacatcagtttcttttgaaaatcgggatgattacataaattttctcaatgcttgtcctatcctagaagatttgcatgct |
227 |
Q |
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| T |
3255521 |
ttggaatatgtttattttgaaaattggaatgattatataaattttctctatgcttgtcctatcctagaagatttgcatgct |
3255441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 228
Target Start/End: Original strand, 7814380 - 7814553
Alignment:
| Q |
55 |
tctcgcaaacccttgttgttctcaaacttcaaagtttatatgttggaaaggatacttcaagtgttcatcttccatcactcaaaaccctaaatctgacatc |
154 |
Q |
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|||| |||||||||||||||||||||||| |||| | ||||||| |||||||| ||||| ||||||| || ||||||| ||| || | | | |
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| T |
7814380 |
tctctcaaacccttgttgttctcaaacttatggatttacacattggaaatgatacttcttgtgttgatcttccctcgctcaaaatcctgcatttaagtta |
7814479 |
T |
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| Q |
155 |
agtttcttttgaaaatcgggatgattacataaattttctcaatgcttgtcctatcctagaagatttgcatgctg |
228 |
Q |
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| T |
7814480 |
tgtttattttgaaaatcagaatgattacataggttttctttctgcttgtcccaacctagaagatttgcatgctg |
7814553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 138
Target Start/End: Original strand, 7871599 - 7871692
Alignment:
| Q |
45 |
gttattttcgtctcgcaaacccttgttgttctcaaacttcaaagtttatatgttggaaaggatacttcaagtgttcatcttccatcactcaaaa |
138 |
Q |
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||||||||| |||| |||||||||||||||||||||||| | || || || || || ||||||||| ||||||||||||||| ||||||| |
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| T |
7871599 |
gttattttcatctctcaaacccttgttgttctcaaacttaagaggatagatttttcaattgatacttcatgtgttcatcttccattgctcaaaa |
7871692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 227
Target Start/End: Original strand, 7860354 - 7860476
Alignment:
| Q |
105 |
gatacttcaagtgttcatcttccatcactcaaaaccctaaatctgacatcagtttcttttgaaaatcgggatgattacataaattttctcaatgcttgtc |
204 |
Q |
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|||||||| ||||| |||||||||| |||||||| | || ||| ||| ||| |||| ||||||| |||||||||| |||||||| |||||||| |
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| T |
7860354 |
gatacttcgtgtgttgatcttccatcgctcaaaacattgcatttgaaatccgttcattttacaaatcggaatgattacatcaattttctttctgcttgtc |
7860453 |
T |
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| Q |
205 |
ctatcctagaagatttgcatgct |
227 |
Q |
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|||| || |||||||| |||||| |
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| T |
7860454 |
ctattctggaagatttacatgct |
7860476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 10 - 231
Target Start/End: Complemental strand, 19317447 - 19317226
Alignment:
| Q |
10 |
ttcatctcactttgcctttccacaccttaaagcatgttattttcgtctcgcaaacccttgttgttctcaaacttcaaagtttatatgttggaaaggatac |
109 |
Q |
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||||||||| |||||||| ||| ||||| | || | | |||| ||||| ||||||||||||||||| |||||| ||||||||||||||||||||| ||| |
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| T |
19317447 |
ttcatctcagtttgccttcccataccttgatgcccgatctttttgtctctcaaacccttgttgttctaaaacttgaaagtttatatgttggaaagggtac |
19317348 |
T |
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| Q |
110 |
ttcaagtgttcatcttccatcactcaaaaccctaaatctgacatcagtttcttttgaaaatcgggatgattacataaattttctcaatgcttgtcctatc |
209 |
Q |
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||| ||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||| || || ||||| |||||||||| |||||||||||||| |
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| T |
19317347 |
ttcgtgtgttcatcttccatcacttaaaaccctaaatctgacatcagtttattttcaaaattggaataattacgtaaattttctttatgcttgtcctatc |
19317248 |
T |
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| Q |
210 |
ctagaagatttgcatgctgaac |
231 |
Q |
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||||||||||| |||| |||| |
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| T |
19317247 |
ttagaagatttgtatgcagaac |
19317226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 30 - 220
Target Start/End: Original strand, 14017997 - 14018187
Alignment:
| Q |
30 |
cacaccttaaagcatgttattttcgtctcgcaaacccttgttgttctcaaacttcaaagtttatatgttggaaaggatacttcaagtgttcatcttccat |
129 |
Q |
| |
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|||||||| |||| ||| ||||| | || |||||| |||||||||||||||||||| | ||| || ||| |||||||||||| ||||| ||||||| | |
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| T |
14017997 |
cacaccttgaagcccgttgttttcatatcccaaacctttgttgttctcaaacttcaacggttagatattgaaaaggatacttcgtgtgttgatcttccgt |
14018096 |
T |
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| Q |
130 |
cactcaaaaccctaaatctgacatcagtttcttttgaaaatcgggatgattacataaattttctcaatgcttgtcctatcctagaagattt |
220 |
Q |
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| T |
14018097 |
cactcaaaaccctgaatttggaatatgtttcttttgaaaattggaatgattatataaattttctttatggttgtcctatcctagaagattt |
14018187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 227
Target Start/End: Complemental strand, 37997345 - 37997164
Alignment:
| Q |
46 |
ttattttcgtctcgcaaacccttgttgttctcaaacttcaaagtttatatgttggaaaggatacttcaagtgttcatcttccatcactcaaaaccctaaa |
145 |
Q |
| |
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|||||||| |||| |||||||||||||||||||||||| |||| ||| |||||||||| ||||||| ||||| |||||||||| || |||||||| | |
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| T |
37997345 |
ttattttcatctcccaaacccttgttgttctcaaacttaaaaggttaaatgttggaaatgatactttgtgtgttgatcttccatcgctgaaaacccttta |
37997246 |
T |
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| Q |
146 |
tctgacatcagtttcttttgaaaatcgggatgattacataaattttctcaatgcttgtcctatcctagaagatttgcatgct |
227 |
Q |
| |
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| || || ||| | |||| |||||| | | |||||||| |||||||| |||||||||||||| |||||||| |||||| |
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| T |
37997245 |
tttgcaattagtgtattttaaaaatcagaaggattacattaattttctttccgcttgtcctatccttgaagattttcatgct |
37997164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 185
Target Start/End: Complemental strand, 166598 - 166485
Alignment:
| Q |
70 |
ttgttctcaaacttcaaagtttatatgttggaaaggatacttcaagtgttcatcttccatcactcaaaaccctaaatctgacatcagtttcttttgaaaa |
169 |
Q |
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|||||||||||||| ||| |||||||||||| || ||||||| ||||| |||||||||||||| |||| || || | |||||||||| |||| ||| |
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| T |
166598 |
ttgttctcaaacttgaaaatttatatgttggtaatgatactttgtgtgttaatcttccatcactc--aaccttacatttaacatcagtttatttttaaag |
166501 |
T |
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| Q |
170 |
tcgggatgattacata |
185 |
Q |
| |
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|| | ||||||||||| |
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| T |
166500 |
tcagaatgattacata |
166485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 224
Target Start/End: Original strand, 24112215 - 24112323
Alignment:
| Q |
116 |
tgttcatcttccatcactcaaaaccctaaatctgacatcagtttcttttgaaaatcgggatgattacataaattttctcaatgcttgtcctatcctagaa |
215 |
Q |
| |
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|||| |||||||||| ||||||| |||| | ||| || |||| || |||||||| | |||||| ||| || |||| |||||||||||||| ||| || |
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| T |
24112215 |
tgttgatcttccatctctcaaaatcctaggtttgaaatatgtttgttgtgaaaatcagaatgatttcattaagcttcttaatgcttgtcctattctacaa |
24112314 |
T |
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| Q |
216 |
gatttgcat |
224 |
Q |
| |
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||||||||| |
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|
| T |
24112315 |
gatttgcat |
24112323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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