View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2643-Insertion-2 (Length: 209)
Name: NF2643-Insertion-2
Description: NF2643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2643-Insertion-2 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 209
Target Start/End: Original strand, 47985028 - 47985229
Alignment:
| Q |
8 |
aaaataatgtcagagtcacggccaaaaactagatatgacgtggaagaattgtaacataacaaattgtaatctttcacctatctttaggattacaaaaatt |
107 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47985028 |
aaaataatgttagagtcacggccaaaaactagatatgacgtggaagaattgtaacataacaaattgtaatctttcacctatctttaggattacaaaaatt |
47985127 |
T |
|
| Q |
108 |
taccatgaataaaatctagaaacttcagccaaaattggaaaacaattgtttccaatcaaaagtttgcatgcactacaaaaactgatttttacccctcatt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47985128 |
taccatgaataaaatctagaaacttcagccaaaattggaaaacaattgtttccaatcaaaagtttgcatgcactacaaaaactgatttttacccctcatt |
47985227 |
T |
|
| Q |
208 |
ga |
209 |
Q |
| |
|
|| |
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|
| T |
47985228 |
ga |
47985229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 209
Target Start/End: Original strand, 47994315 - 47994516
Alignment:
| Q |
8 |
aaaataatgtcagagtcacggccaaaaactagatatgacgtggaagaattgtaacataacaaattgtaatctttcacctatctttaggattacaaaaatt |
107 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47994315 |
aaaataatgttagagtcacggccaaaaactagatatgacgtggaagaattgtaacataacaaattgtaatctttcacctatctttaggattacaaaaatt |
47994414 |
T |
|
| Q |
108 |
taccatgaataaaatctagaaacttcagccaaaattggaaaacaattgtttccaatcaaaagtttgcatgcactacaaaaactgatttttacccctcatt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47994415 |
taccatgaataaaatctagaaacttcagccaaaattggaaaacaattgtttccaatcaaaagtttgcatgcactacaaaaactgatttttacccctcatt |
47994514 |
T |
|
| Q |
208 |
ga |
209 |
Q |
| |
|
|| |
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|
| T |
47994515 |
ga |
47994516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 209
Target Start/End: Original strand, 48003602 - 48003803
Alignment:
| Q |
8 |
aaaataatgtcagagtcacggccaaaaactagatatgacgtggaagaattgtaacataacaaattgtaatctttcacctatctttaggattacaaaaatt |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48003602 |
aaaataatgttagagtcacggccaaaaactagatatgacgtggaagaattgtaacataacaaattgtaatctttcacctatctttaggattacaaaaatt |
48003701 |
T |
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| Q |
108 |
taccatgaataaaatctagaaacttcagccaaaattggaaaacaattgtttccaatcaaaagtttgcatgcactacaaaaactgatttttacccctcatt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48003702 |
taccatgaataaaatctagaaacttcagccaaaattggaaaacaattgtttccaatcaaaagtttgcatgcactacaaaaactgatttttacccctcatt |
48003801 |
T |
|
| Q |
208 |
ga |
209 |
Q |
| |
|
|| |
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|
| T |
48003802 |
ga |
48003803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 209
Target Start/End: Original strand, 48012887 - 48013088
Alignment:
| Q |
8 |
aaaataatgtcagagtcacggccaaaaactagatatgacgtggaagaattgtaacataacaaattgtaatctttcacctatctttaggattacaaaaatt |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48012887 |
aaaataatgttagagtcacggccaaaaactagatatgacgtggaagaattgtaacataacaaattgtaatctttcacctatctttaggattacaaaaatt |
48012986 |
T |
|
| Q |
108 |
taccatgaataaaatctagaaacttcagccaaaattggaaaacaattgtttccaatcaaaagtttgcatgcactacaaaaactgatttttacccctcatt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48012987 |
taccatgaataaaatctagaaacttcagccaaaattggaaaacaattgtttccaatcaaaagtttgcatgcactacaaaaactgatttttacccctcatt |
48013086 |
T |
|
| Q |
208 |
ga |
209 |
Q |
| |
|
|| |
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|
| T |
48013087 |
ga |
48013088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 48 - 163
Target Start/End: Original strand, 23127114 - 23127229
Alignment:
| Q |
48 |
tggaagaattgtaacataacaaattgtaatctttcacctatctttaggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaattggaa |
147 |
Q |
| |
|
|||||||||||||||| |||||||| | || ||||| || | |||||||||||||||||||||||| ||||||||||||||||||| |||||| || | |
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| T |
23127114 |
tggaagaattgtaacagaacaaattatgatatttcaactgacattaggattacaaaaatttaccatgcataaaatctagaaacttcatccaaaaatgcag |
23127213 |
T |
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| Q |
148 |
aacaattgtttccaat |
163 |
Q |
| |
|
|| ||||||| ||||| |
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| T |
23127214 |
aataattgttgccaat |
23127229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 75 - 155
Target Start/End: Complemental strand, 5334635 - 5334555
Alignment:
| Q |
75 |
aatctttcacctatctttaggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaattggaaaacaattg |
155 |
Q |
| |
|
||||||||||| ||||| || |||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
5334635 |
aatctttcaccactctttgtgaatacaaaaattcaccatggataaaatctagaaacttcagccaaaaatggaaaacaattg |
5334555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 5255865 - 5255930
Alignment:
| Q |
92 |
taggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaattggaaaacaattgtt |
157 |
Q |
| |
|
|||||||||| ||| ||| |||| |||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
5255865 |
taggattacataaacttagcatggataaaatctagaaacttcagccaaaaatggaaaacaattgtt |
5255930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 157
Target Start/End: Complemental strand, 5351946 - 5351832
Alignment:
| Q |
42 |
atgacgtggaagaattgtaacataacaaattgtaatctttcacctatctttaggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaa |
141 |
Q |
| |
|
||||| ||||| |||||||||| |||||||| ||||||||||| ||||| || || ||||||| | |||| |||||||| ||||||| ||||||||| |
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| T |
5351946 |
atgacatggaacaattgtaacagaacaaattagaatctttcaccactctttgtgaata-aaaaattcaacatggataaaatcaagaaactacagccaaaa |
5351848 |
T |
|
| Q |
142 |
ttggaaaacaattgtt |
157 |
Q |
| |
|
||||||||||||||| |
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|
| T |
5351847 |
atggaaaacaattgtt |
5351832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 5180533 - 5180598
Alignment:
| Q |
92 |
taggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaattggaaaacaattgtt |
157 |
Q |
| |
|
|||||||||||||| ||| |||| |||||||||| ||||||||||| ||| ||||||||||||||| |
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|
| T |
5180533 |
taggattacaaaaacttagcatggataaaatctaaaaacttcagccgaaaatggaaaacaattgtt |
5180598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 5098732 - 5098646
Alignment:
| Q |
28 |
gccaaaaactagatatgacgtggaagaattgtaacataacaaattgtaatctttcacctatctttaggattacaaaaatttaccatg |
114 |
Q |
| |
|
||||||| ||| ||||||| |||||||||||||||| ||||| || ||| ||||||| | |||||||||||| |||||||||||| |
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|
| T |
5098732 |
gccaaaagctatatatgacatggaagaattgtaacagaacaacttacaatagttcacctctatttaggattacacaaatttaccatg |
5098646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 5687614 - 5687573
Alignment:
| Q |
116 |
ataaaatctagaaacttcagccaaaattggaaaacaattgtt |
157 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
5687614 |
ataaaatctagaaactgcagccaaaattggaaaacaattgtt |
5687573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 5100521 - 5100612
Alignment:
| Q |
40 |
atatgacgtggaagaattgtaacataacaaattgtaatctttcacctatctttaggattacaaaaatttaccatgaataaaatctagaaact |
131 |
Q |
| |
|
||||||| |||||||||||||||| |||||||| ||||||||| ||||| || |||||||||| |||| | |||||||||||||||| |
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| T |
5100521 |
atatgacatggaagaattgtaacagaacaaattagaatctttcagaactctttgtgaatacaaaaattcaccaaggataaaatctagaaact |
5100612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 5135630 - 5135713
Alignment:
| Q |
48 |
tggaagaattgtaacataacaaattgtaatctttcacctatctttaggattacaaaaatttaccatgaataaaatctagaaact |
131 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||| ||||| || |||||||||| |||| |||||||||||||||||| |
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| T |
5135630 |
tggaagaattgtaacagaacaaattagaatctttcagaactctttttgaatacaaaaattcaccaagaataaaatctagaaact |
5135713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 142
Target Start/End: Complemental strand, 5398604 - 5398509
Alignment:
| Q |
42 |
atgacgtggaagaattgtaacataacaaattgtaatctttcacctatctttaggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaa |
141 |
Q |
| |
|
||||| |||||||||||||||| |||||||| ||||||||||| ||| || || ||||||| |||||| ||||||||||||||||| |||||||| |
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| T |
5398604 |
atgacatggaagaattgtaacagaacaaattagaatctttcaccactct----gaata-aaaaattcaccatggataaaatctagaaacttaagccaaaa |
5398510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 163
Target Start/End: Original strand, 5242214 - 5242276
Alignment:
| Q |
101 |
aaaaatttaccatgaataaaatctagaaacttcagccaaaattggaaaacaattgtttccaat |
163 |
Q |
| |
|
||||||| |||||| |||||||||||||||| ||| ||| ||||||||||||||| ||||| |
|
|
| T |
5242214 |
aaaaattcaccatggataaaatctagaaactacagaaaaagatggaaaacaattgttgccaat |
5242276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 142
Target Start/End: Complemental strand, 5439587 - 5439519
Alignment:
| Q |
74 |
taatctttcacctatctttaggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaat |
142 |
Q |
| |
|
|||||||| | || |||||||||||||||||| |||| ||| ||||||| | |||||||| ||||||| |
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|
| T |
5439587 |
taatcttttatctctctttaggattacaaaaaattacaatggataaaataaaaaaacttcaaccaaaat |
5439519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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