View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2643-Insertion-3 (Length: 195)
Name: NF2643-Insertion-3
Description: NF2643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2643-Insertion-3 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 169; Significance: 7e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 7e-91
Query Start/End: Original strand, 7 - 195
Target Start/End: Original strand, 37816400 - 37816588
Alignment:
| Q |
7 |
acaagaaaccagaagagaatgatgaaccaagagtcaacctgatttgtcgtatgatatgtaggcaccaagcattataaaatgtattccccccgcattgaaa |
106 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||| |
|
|
| T |
37816400 |
acaagaaaccagaagaaaatgatgaaccaagagttaacctgatttgtcgtatgatatgtaggcaccgagcattataaaatgtattcctcctgcattgaaa |
37816499 |
T |
|
| Q |
107 |
gaataatagaaagtggatgatgatccactctcttctgacggaaatgcaaatcgagaactataagcaacgaatgtcttgttttcagcttg |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37816500 |
gaataatagaaagtggatgatgatccactctcttctgacggaaatgcaaatcgagaactataagcaacgaatgtcttgttttcagcttg |
37816588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 9 - 195
Target Start/End: Original strand, 37808988 - 37809174
Alignment:
| Q |
9 |
aagaaaccagaagagaatgatgaaccaagagtcaacctgatttgtcgtatgatatgtaggcaccaagcattataaaatgtattccccccgcattgaaaga |
108 |
Q |
| |
|
|||||| ||||||| || |||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
37808988 |
aagaaagcagaagaaaaggatgaaccaagagttaacctgatttgtcgtatgatatgtaggaaccgagcattataaaatgtattcctcccgcattgaaaga |
37809087 |
T |
|
| Q |
109 |
ataatagaaagtggatgatgatccactctcttctgacggaaatgcaaatcgagaactataagcaacgaatgtcttgttttcagcttg |
195 |
Q |
| |
|
|||||| ||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37809088 |
ataatataaagttgaagatgacccactctcttccgacggaaatgcaaatcgagaactataagcaacgaatgtcttgttttcagcttg |
37809174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 62 - 187
Target Start/End: Complemental strand, 19906923 - 19906798
Alignment:
| Q |
62 |
atgtaggcaccaagcattataaaatgtattccccccgcattgaaagaataatagaaagtggatgatgatccactctcttctgacggaaatgcaaatcgag |
161 |
Q |
| |
|
||||| || |||||||| |||||||| || ||||| |||||||||||||| ||||| |||||||| |||||||| ||||| || || || ||||| | | |
|
|
| T |
19906923 |
atgtaagccccaagcataataaaatgaatgcccccagcattgaaagaatagtagaatgtggatgacgatccactttcttcagaggggaacgcaaacctgg |
19906824 |
T |
|
| Q |
162 |
aactataagcaacgaatgtcttgttt |
187 |
Q |
| |
|
|||| ||||| || ||||||| |||| |
|
|
| T |
19906823 |
aactgtaagccacaaatgtctggttt |
19906798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University