View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2643R-Insertion-1 (Length: 877)

Name: NF2643R-Insertion-1
Description: NF2643R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2643R-Insertion-1
NF2643R-Insertion-1
[»] chr2 (5 HSPs)
chr2 (705-873)||(18929720-18929887)
chr2 (8-178)||(17403898-17404068)
chr2 (701-877)||(17403202-17403377)
chr2 (798-873)||(26651325-26651400)
chr2 (733-853)||(25519999-25520118)
[»] chr3 (9 HSPs)
chr3 (700-877)||(9033046-9033224)
chr3 (730-873)||(4765286-4765428)
chr3 (701-877)||(4770133-4770307)
chr3 (798-877)||(15687341-15687420)
chr3 (798-867)||(29614037-29614106)
chr3 (799-877)||(24698727-24698805)
chr3 (800-877)||(16242605-16242683)
chr3 (811-877)||(4832190-4832257)
chr3 (798-848)||(13428406-13428456)
[»] chr6 (5 HSPs)
chr6 (701-857)||(17525290-17525444)
chr6 (731-859)||(31125745-31125872)
chr6 (704-877)||(22394009-22394178)
chr6 (798-877)||(16177677-16177759)
chr6 (809-877)||(32784466-32784534)
[»] chr5 (11 HSPs)
chr5 (728-877)||(20064063-20064209)
chr5 (797-877)||(25951703-25951783)
chr5 (798-877)||(20058300-20058379)
chr5 (797-877)||(21165575-21165655)
chr5 (109-176)||(24879513-24879580)
chr5 (795-873)||(23209772-23209850)
chr5 (798-842)||(19217727-19217771)
chr5 (798-873)||(20061249-20061323)
chr5 (767-842)||(17987914-17987988)
chr5 (771-877)||(24878784-24878889)
chr5 (767-877)||(22011479-22011588)
[»] chr8 (4 HSPs)
chr8 (686-867)||(28371525-28371705)
chr8 (797-877)||(23539981-23540061)
chr8 (800-877)||(10662110-10662187)
chr8 (701-873)||(16600985-16601159)
[»] chr7 (6 HSPs)
chr7 (785-877)||(2545772-2545864)
chr7 (800-867)||(14986744-14986806)
chr7 (800-867)||(15416355-15416417)
chr7 (798-848)||(4173104-4173154)
chr7 (796-832)||(2563197-2563233)
chr7 (797-856)||(20146312-20146371)
[»] chr4 (2 HSPs)
chr4 (797-877)||(11362080-11362160)
chr4 (764-842)||(10071001-10071078)
[»] chr1 (3 HSPs)
chr1 (686-877)||(22619579-22619768)
chr1 (798-877)||(11013493-11013572)
chr1 (801-877)||(20146610-20146686)
[»] scaffold0002 (1 HSPs)
scaffold0002 (701-854)||(373696-373847)
[»] scaffold0555 (1 HSPs)
scaffold0555 (805-873)||(5337-5405)
[»] scaffold0795 (1 HSPs)
scaffold0795 (798-877)||(5725-5804)
[»] scaffold0161 (1 HSPs)
scaffold0161 (805-854)||(5339-5388)


Alignment Details
Target: chr2 (Bit Score: 117; Significance: 4e-59; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 705 - 873
Target Start/End: Complemental strand, 18929887 - 18929720
Alignment:
Q  705 atcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagc 804  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||| |||||||||| ||||| ||| |||| |||||||||||    
T  18929887 atcatgctttgaaatacttagagttttctcaaaaatgtcaattctctcctttgaatatattcagtcgaaaatgacattt-ttgaggggaaatttgttagc 18929789  T
Q  805 tggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagt 873  Q
    |||||||||||||| |||||||||||||||| |||||| ||||| ||||||||||||||||||||||||    
T  18929788 tggtattttcaccaacctcatttaatgtggtgaacattagttgacttttactcttgcaggaattgaagt 18929720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 8 - 178
Target Start/End: Complemental strand, 17404068 - 17403898
Alignment:
Q  8 acatattgagcgaatcatgtgagaagactataggtttgtgaccttcgcggccaggaaagtcgtcctcaaccttttcagggtctaatttggaatatgcaaa 107  Q
    |||| ||||||||| ||||||| | |||| |||||||| ||||||||| |||||||||||| ||||||||||||||||||| ||||||||||| ||   |    
T  17404068 acatgttgagcgaagcatgtgaaaggactctaggtttgcgaccttcgctgccaggaaagtcttcctcaaccttttcagggtgtaatttggaatctgggta 17403969  T
Q  108 gggccctaggaaggcgtgaacagtaccagagacagagtatggaataagtacatgagatttccaaatcttgg 178  Q
     |||||||  ||||||| ||||||||||||||||||||||||||| ||||| ||||||||| |||||||||    
T  17403968 aggccctataaaggcgtaaacagtaccagagacagagtatggaatgagtacctgagatttctaaatcttgg 17403898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 701 - 877
Target Start/End: Complemental strand, 17403377 - 17403202
Alignment:
Q  701 tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt 800  Q
    ||||||||||||||||||||||||| |||| || ||||||||||||  ||||| | ||  || ||  ||| |||||||||||| ||   ||| ||||| |    
T  17403377 tgacatcatgctttgaaatacttagagttt-ctgaaaaatgtcaatcttctccttcgaaaatctttagtcaaaaatggcatttttttttgggaaattttt 17403279  T
Q  801 tagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttt 877  Q
    ||||||||| ||| |||||||||||||||||||||||||||| ||| | ||||||  |||||| |||||||||||||    
T  17403278 tagctggtaattttaccagcctcatttaatgtggtcaacattagttaacttttacctttgcagcaattgaagtcttt 17403202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 798 - 873
Target Start/End: Complemental strand, 26651400 - 26651325
Alignment:
Q  798 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagt 873  Q
    ||||||| |||| |||||||||||||||||||||||||||| ||| ||||| |||||||||||||| ||| |||||    
T  26651400 tgttagcaggtaatttcaccagcctcatttaatgtggtcaatattagttgacttttactcttgcagaaatcgaagt 26651325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 733 - 853
Target Start/End: Original strand, 25519999 - 25520118
Alignment:
Q  733 tcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgt 832  Q
    ||||||||| ||||| ||||| | |||||||||| |||||||||||||||| ||||| |||||||||||||   |||||||||  || |  ||||||||     
T  25519999 tcaaaaatgccaattatctccttcgattatattcagtcgaaaatggcattt-ttgggtggcaatttgttaggctgtattttcaaaaggccaatttaatgc 25520097  T
Q  833 ggtcaacattggttgattttt 853  Q
     ||||||||| ||||| ||||    
T  25520098 agtcaacattagttgactttt 25520118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 6e-52; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 700 - 877
Target Start/End: Original strand, 9033046 - 9033224
Alignment:
Q  700 gtgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggc--aatt 797  Q
    |||||||||||||||| |||||||    ||||| |||||||| |||||| |||| |||||||||||| |||||||||||||||| ||||||| |  ||||    
T  9033046 gtgacatcatgctttggaatactttaatttttcccaaaaatgccaattccctcctttgattatattcagtcgaaaatggcattt-ttgggggtcccaatt 9033144  T
Q  798 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttt 877  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||    
T  9033145 tgttagctggtattttcaccagcctcatttaatatggtcaacattagttgacttttactcttgcaggaattgaagtcttt 9033224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 730 - 873
Target Start/End: Original strand, 4765286 - 4765428
Alignment:
Q  730 ttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaa 829  Q
    |||||||||||  ||||||||||| |  | | | ||| |||||||||||||||| |||||| | |||||||||| ||| |||||||||||||||||||||    
T  4765286 ttctcaaaaataccaattctctccttctaatttgttcagtcgaaaatggcattt-ttggggtgtaatttgttagttggaattttcaccagcctcatttaa 4765384  T
Q  830 tgtggtcaacattggttgatttttactcttgcaggaattgaagt 873  Q
    |||| |||||||| ||||| |||||||||||||||||| |||||    
T  4765385 tgtgatcaacattagttgacttttactcttgcaggaatcgaagt 4765428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 701 - 877
Target Start/End: Complemental strand, 4770307 - 4770133
Alignment:
Q  701 tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt 800  Q
    ||||||||||||||||||||||||| |||| || ||||||| ||||||||||| | || || |||| |||||||||||||||||  |||||| || ||||    
T  4770307 tgacatcatgctttgaaatacttagagttt-ctaaaaaatgccaattctctccttcgaatagattcagtcgaaaatggcatttca-ggggggtaaattgt 4770210  T
Q  801 tagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttt 877  Q
    ||||||||| ||| | ||| ||| |||||||||| ||||||| ||| | |||||  ||||||||||| | |||||||    
T  4770209 tagctggtaattttaacagactcgtttaatgtggccaacattcgtttacttttatccttgcaggaatcgtagtcttt 4770133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 798 - 877
Target Start/End: Complemental strand, 15687420 - 15687341
Alignment:
Q  798 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttt 877  Q
    ||||||||||||  ||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||  ||||||||    
T  15687420 tgttagctggtaagttcaccagcctcatttaatgtggtcaacattagttgacttttactcttgtaggaatcaaagtcttt 15687341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 798 - 867
Target Start/End: Original strand, 29614037 - 29614106
Alignment:
Q  798 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaat 867  Q
    ||||||||| ||||||||| ||||||||||||||||||||| ||| ||||| ||||||||||||| ||||    
T  29614037 tgttagctgctattttcactagcctcatttaatgtggtcaatattagttgacttttactcttgcatgaat 29614106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 799 - 877
Target Start/End: Original strand, 24698727 - 24698805
Alignment:
Q  799 gttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttt 877  Q
    |||||||| || |||||||| ||||||||||| | ||||||||| ||||| ||||||| ||| ||||||||||||||||    
T  24698727 gttagctgataatttcaccaacctcatttaatttagtcaacattagttgacttttactattggaggaattgaagtcttt 24698805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 800 - 877
Target Start/End: Original strand, 16242605 - 16242683
Alignment:
Q  800 ttagctggtattttcaccagcctcatttaatgtggtcaacattggtt-gatttttactcttgcaggaattgaagtcttt 877  Q
    |||||||||||||||| || ||||||||||||||||||||||| ||| || | ||||| |||||||||  |||||||||    
T  16242605 ttagctggtattttcatcaacctcatttaatgtggtcaacattagttagactgttacttttgcaggaagcgaagtcttt 16242683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 811 - 877
Target Start/End: Original strand, 4832190 - 4832257
Alignment:
Q  811 tttcaccagcctcatttaatgtggtcaacattggttga-tttttactcttgcaggaattgaagtcttt 877  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||||   |||||||||| |||||||||    
T  4832190 tttcaccagcctcatttaatatggtcaacattagttgactttttatctttgcaggaatcgaagtcttt 4832257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 798 - 848
Target Start/End: Original strand, 13428406 - 13428456
Alignment:
Q  798 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttga 848  Q
    |||||||||||| ||||||||||||| ||||||| |||| ||||| |||||    
T  13428406 tgttagctggtaatttcaccagcctcgtttaatgcggtcgacattagttga 13428456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 1e-37; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 701 - 857
Target Start/End: Complemental strand, 17525444 - 17525290
Alignment:
Q  701 tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt 800  Q
    |||||||||||||| |||||||||| ||||| ||||||||    ||||||||| |||| ||||||  ||||||||| |||||| ||||||||||||||||    
T  17525444 tgacatcatgcttttaaatacttagagtttt-tcaaaaattctgattctctcctttgaatatattttgtcgaaaatagcattt-ttggggggcaatttgt 17525347  T
Q  801 tagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactc 857  Q
    ||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||||    
T  17525346 tagctggtaatttcaccagtctcatttaatgtggtcaacattagttgacttttactc 17525290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 731 - 859
Target Start/End: Original strand, 31125745 - 31125872
Alignment:
Q  731 tctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaat 830  Q
    ||||||||||| ||||||||||| |||| ||||||| || ||||||  ||||| || ||||||||||| ||||||| ||||||||||| |||||||||||    
T  31125745 tctcaaaaatgccaattctctcctttgaatatattcagtagaaaatttcattt-ttagggggcaattttttagctgatattttcaccatcctcatttaat 31125843  T
Q  831 gtggtcaacattggttgatttttactctt 859  Q
    |||||||||||| ||||| ||||||||||    
T  31125844 gtggtcaacattagttgacttttactctt 31125872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 704 - 877
Target Start/End: Original strand, 22394009 - 22394178
Alignment:
Q  704 catcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttag 803  Q
    ||||||||| || ||||||||| |||| |||||||||  ||||| ||||| |  | || |||  |||||||||| ||||| |||||||||||| ||||||    
T  22394009 catcatgctctggaatacttagagttt-ctcaaaaattccaattatctccttcaaatagattttgtcgaaaatgacattt-ttggggggcaatctgttag 22394106  T
Q  804 ctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttt 877  Q
     ||||| ||||||||||||  |||||||||||||||||| |||   ||||||||||||||||||  ||||||||    
T  22394107 ttggtaatttcaccagcct--tttaatgtggtcaacattagttccgttttactcttgcaggaatcaaagtcttt 22394178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 798 - 877
Target Start/End: Complemental strand, 16177759 - 16177677
Alignment:
Q  798 tgttagctggtattttcacc---agcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttt 877  Q
    ||||||||||||||||||||   |||||||||||||||||| |||||| ||||| ||||||||||| ||||||  ||||||||    
T  16177759 tgttagctggtattttcacctccagcctcatttaatgtggttaacattagttgacttttactcttgtaggaatcaaagtcttt 16177677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 809 - 877
Target Start/End: Complemental strand, 32784534 - 32784466
Alignment:
Q  809 attttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttt 877  Q
    ||||||| ||| ||||||||||||||| || ||| ||||| ||||||| || ||||||||||| |||||    
T  32784534 attttcatcagtctcatttaatgtggttaatattagttgacttttacttttacaggaattgaaatcttt 32784466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 1e-31; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 728 - 877
Target Start/End: Original strand, 20064063 - 20064209
Alignment:
Q  728 ttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcattt 827  Q
    ||||| ||||||||||||| |||||| |||| ||   ||  ||||||||| ||||| ||||||| |||||||||||||| |||||||||||||||| |||    
T  20064063 ttttcccaaaaatgtcaatcctctcctttgagtag--tcattcgaaaatgacattt-ttgggggacaatttgttagctgttattttcaccagcctcgttt 20064159  T
Q  828 aatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttt 877  Q
    ||||||||||||||  ||||| |||||||||||||||||| |||||||||    
T  20064160 aatgtggtcaacatcagttgacttttactcttgcaggaatcgaagtcttt 20064209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 797 - 877
Target Start/End: Complemental strand, 25951783 - 25951703
Alignment:
Q  797 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttt 877  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||  ||||||||    
T  25951783 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattagttgacttttactcttgcacgaatcaaagtcttt 25951703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 798 - 877
Target Start/End: Original strand, 20058300 - 20058379
Alignment:
Q  798 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttt 877  Q
    ||||||||| ||||||||||||||||||||||||||||||  ||| ||||| |||||||||||||||||| |||||||||    
T  20058300 tgttagctgatattttcaccagcctcatttaatgtggtcagtattagttgacttttactcttgcaggaatcgaagtcttt 20058379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 797 - 877
Target Start/End: Complemental strand, 21165655 - 21165575
Alignment:
Q  797 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttt 877  Q
    ||||||||| ||||||| |||||||||| ||||||||||||||||| ||||| |||||||||||||||||  |||||||||    
T  21165655 ttgttagctagtatttttaccagcctcacttaatgtggtcaacattagttgacttttactcttgcaggaagcgaagtcttt 21165575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 24879580 - 24879513
Alignment:
Q  109 ggccctaggaaggcgtgaacagtaccagagacagagtatggaataagtacatgagatttccaaatctt 176  Q
    |||||||| |||| || ||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  24879580 ggccctagaaaggtgtaaacagtaccagagacagagtatggaatgagtacctgagatttccaaatctt 24879513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 795 - 873
Target Start/End: Original strand, 23209772 - 23209850
Alignment:
Q  795 atttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagt 873  Q
    |||| ||||||| ||||| ||||||||||| ||||||||||||||| | ||||| |||||||||||||||||| |||||    
T  23209772 atttattagctgttatttgcaccagcctcaattaatgtggtcaacaatagttgacttttactcttgcaggaatcgaagt 23209850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 798 - 842
Target Start/End: Original strand, 19217727 - 19217771
Alignment:
Q  798 tgttagctggtattttcaccagcctcatttaatgtggtcaacatt 842  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  19217727 tgttagctggtaatttcaccagcctcatttaatgtggtcaacatt 19217771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 798 - 873
Target Start/End: Complemental strand, 20061323 - 20061249
Alignment:
Q  798 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagt 873  Q
    |||| |||||||||| |||||||||| |||||| |||||| |||| ||||| |||||||||||||||||| |||||    
T  20061323 tgtttgctggtattt-caccagcctcgtttaatatggtcaccattagttgacttttactcttgcaggaatcgaagt 20061249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 767 - 842
Target Start/End: Complemental strand, 17987988 - 17987914
Alignment:
Q  767 cgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacatt 842  Q
    |||||||||||| |||| |||||||||| |||||||||| ||| ||||  ||| |||||||||| |||||||||||    
T  17987988 cgtcgaaaatgggattt-ttggggggcattttgttagcttgtaatttcgacaggctcatttaatatggtcaacatt 17987914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 771 - 877
Target Start/End: Complemental strand, 24878889 - 24878784
Alignment:
Q  771 gaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattga 870  Q
    ||||||| ||||| ||||||| ||||||||||||  ||| ||||| ||| |||||||||||  ||||||||| ||||| |||||   ||||| |||| ||    
T  24878889 gaaaatgacattt-ttgggggtcaatttgttagcctgtaatttcaacaggctcatttaatgcagtcaacattagttgacttttatctttgcaagaatcga 24878791  T
Q  871 agtcttt 877  Q
    |||||||    
T  24878790 agtcttt 24878784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 767 - 877
Target Start/End: Complemental strand, 22011588 - 22011479
Alignment:
Q  767 cgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaaca-ttggttga-tttttactcttgcagg 864  Q
    ||||||||||||||||| |  ||||||| ||||||||   ||| ||||| |||  ||||||||||||||||||| |||||||| |||||||| |||||||    
T  22011588 cgtcgaaaatggcattttt--gggggcagtttgttagtctgtaatttcaacagattcatttaatgtggtcaacatttggttgactttttact-ttgcagg 22011492  T
Q  865 aattgaagtcttt 877  Q
    ||| |||| ||||    
T  22011491 aatcgaaggcttt 22011479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 4e-31; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 686 - 867
Target Start/End: Complemental strand, 28371705 - 28371525
Alignment:
Q  686 aagtcatgataattgtgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttct 785  Q
    |||||||||| |  |||||||||||||||| ||||| ||| ||||||||||||||||||||||||||  |||| | ||||| |||||||||  ||||| |    
T  28371705 aagtcatgattagagtgacatcatgctttggaatacatagagttttctcaaaaatgtcaattctctcttttgaatgtattcagtcgaaaataacattt-t 28371607  T
Q  786 tggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaat 867  Q
    | || ||||||||||||| |||||||||||| ||| | ||||||||||| ||| ||| ||||| ||||| ||| | ||||||    
T  28371606 ttggtggcaatttgttagttggtattttcactagcataatttaatgtggccaatattagttgacttttattctggtaggaat 28371525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 797 - 877
Target Start/End: Original strand, 23539981 - 23540061
Alignment:
Q  797 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttt 877  Q
    ||||||||| ||||| |||||||||||||||||||||||||| ||| ||||| |||||||||||||| | |||||||||||    
T  23539981 ttgttagctcgtattgtcaccagcctcatttaatgtggtcaatattagttgacttttactcttgcagtatttgaagtcttt 23540061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 800 - 877
Target Start/End: Complemental strand, 10662187 - 10662110
Alignment:
Q  800 ttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttt 877  Q
    ||||||| || ||||||||| |||||||||||||||||||||| ||||| |||||||||||||||| | |||||||||    
T  10662187 ttagctgataatttcaccagactcatttaatgtggtcaacattagttgacttttactcttgcaggactcgaagtcttt 10662110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 701 - 873
Target Start/End: Complemental strand, 16601159 - 16600985
Alignment:
Q  701 tgacatcatgctttgaaatacttag--cgttttctcaaaaatgtcaattctctccgttgat-tatattccgtcgaaaatggcatttcttggggggcaatt 797  Q
    ||||||||||||||||||| ||| |  |||||| |||||||||||||||| |||| | ||  | | ||| |||||||||| ||||| ||| ||| |||||    
T  16601159 tgacatcatgctttgaaatgcttgggacgtttt-tcaaaaatgtcaattccctccttcgaaattttttcagtcgaaaatgacattttttgaggg-caatt 16601062  T
Q  798 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttga-tttttactcttgcaggaattgaagt 873  Q
    | |||||  ||| ||||| ||| |||||||||||  ||||||||| ||||| ||||||   ||||||||||||||||    
T  16601061 tattagcctgtaatttcaacagactcatttaatgcagtcaacattagttgactttttatctttgcaggaattgaagt 16600985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 2e-30; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 785 - 877
Target Start/End: Complemental strand, 2545864 - 2545772
Alignment:
Q  785 ttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttt 877  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||| |||||||||||||||||| |||||||||    
T  2545864 ttgggaggcaatttgttagctggtaatttcaccagcctcatttaatgtggtcaacattacttgacttttactcttgcaggaatcgaagtcttt 2545772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 800 - 867
Target Start/End: Original strand, 14986744 - 14986806
Alignment:
Q  800 ttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaat 867  Q
    |||||||||||||||||||||||||||     ||||||||||| ||||| ||||||||||||||||||    
T  14986744 ttagctggtattttcaccagcctcatt-----tggtcaacattagttgacttttactcttgcaggaat 14986806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 800 - 867
Target Start/End: Original strand, 15416355 - 15416417
Alignment:
Q  800 ttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaat 867  Q
    |||||||||||||||||||||||||||     ||||||||||| ||||| ||||||||||||||||||    
T  15416355 ttagctggtattttcaccagcctcatt-----tggtcaacattagttgacttttactcttgcaggaat 15416417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 798 - 848
Target Start/End: Original strand, 4173104 - 4173154
Alignment:
Q  798 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttga 848  Q
    |||||||||||||||||||| |||| |||||||||| |||||||| |||||    
T  4173104 tgttagctggtattttcacctgccttatttaatgtgttcaacattagttga 4173154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 796 - 832
Target Start/End: Complemental strand, 2563233 - 2563197
Alignment:
Q  796 tttgttagctggtattttcaccagcctcatttaatgt 832  Q
    |||||||||||||| ||||||||||||||||||||||    
T  2563233 tttgttagctggtaatttcaccagcctcatttaatgt 2563197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 797 - 856
Target Start/End: Complemental strand, 20146371 - 20146312
Alignment:
Q  797 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttact 856  Q
    ||||||| ||||||||||| |||| | || |||||||||||||||| ||||| |||||||    
T  20146371 ttgttagatggtattttcatcagcgttatgtaatgtggtcaacattagttgacttttact 20146312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 4e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 797 - 877
Target Start/End: Complemental strand, 11362160 - 11362080
Alignment:
Q  797 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttt 877  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||| ||||||||||||    
T  11362160 ttgttagctggtattttcaccagcctcatttaaagtggtcaacattagttgacttttactcttgcaggtattgaagtcttt 11362080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 764 - 842
Target Start/End: Complemental strand, 10071078 - 10071001
Alignment:
Q  764 ttccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacatt 842  Q
    ||||||||||||| |||||| |||||||| | |||||||||  ||| ||||  ||| |||||||||| |||||||||||    
T  10071078 ttccgtcgaaaattgcattt-ttggggggaattttgttagcctgtaatttcgacaggctcatttaatatggtcaacatt 10071001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 4e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 686 - 877
Target Start/End: Original strand, 22619579 - 22619768
Alignment:
Q  686 aagtcatgataattgtgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttct 785  Q
    |||||||||| | | ||||||||||||||||||||||||  ||||| |||||| |  ||||| ||||| | || | ||||| |||||||||| ||||| |    
T  22619579 aagtcatgattaatatgacatcatgctttgaaatacttatagtttt-tcaaaattaccaattatctccttcgaatgtattcagtcgaaaatgacattt-t 22619676  T
Q  786 tggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttt 877  Q
    |||| ||||||||||||||   ||||| ||  || |||||||||||||||||||||| ||||| |||||   |||||||||| |||||||||    
T  22619677 tgggaggcaatttgttagcctatatttccaaaaggctcatttaatgtggtcaacattagttgacttttatctttgcaggaatcgaagtcttt 22619768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 798 - 877
Target Start/End: Original strand, 11013493 - 11013572
Alignment:
Q  798 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttt 877  Q
    |||||||||||| ||||| |||||||||||||||||||||||||| | | | |||||||||||||||||| |||||||||    
T  11013493 tgttagctggtaatttcatcagcctcatttaatgtggtcaacattagcttacttttactcttgcaggaatcgaagtcttt 11013572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 801 - 877
Target Start/End: Complemental strand, 20146686 - 20146610
Alignment:
Q  801 tagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttt 877  Q
    |||||||||| |||||||| |||||||||||||| ||||||| ||| | | |||||||||||||||| |||||||||    
T  20146686 tagctggtatattcaccagtctcatttaatgtggccaacattagttaactattactcttgcaggaatcgaagtcttt 20146610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 58; Significance: 6e-24; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 701 - 854
Target Start/End: Original strand, 373696 - 373847
Alignment:
Q  701 tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt 800  Q
    ||||||||||||||||||||||||| ||||| ||||||||| ||||||||| | |  |  |  ||  |||||||||||| ||| ||||||||||||||||    
T  373696 tgacatcatgctttgaaatacttagagtttt-tcaaaaatgacaattctcttcttcaaaaaatttaagtcgaaaatggctttt-ttggggggcaatttgt 373793  T
Q  801 tagctggtattttcaccagcctcatttaatgtggtcaacattggttgattttta 854  Q
    ||| ||||  ||| |||| ||||||||||||||||||||||| ||||| |||||    
T  373794 tagttggttattttaccaacctcatttaatgtggtcaacattagttgactttta 373847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 805 - 873
Target Start/End: Original strand, 5337 - 5405
Alignment:
Q  805 tggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagt 873  Q
    |||||||||||||||||||||||| |||||||||| || ||||| ||||||||||||||| || |||||    
T  5337 tggtattttcaccagcctcatttattgtggtcaactttagttgacttttactcttgcaggtatcgaagt 5405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0795 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0795
Description:

Target: scaffold0795; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 798 - 877
Target Start/End: Original strand, 5725 - 5804
Alignment:
Q  798 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttt 877  Q
    |||||||||||||||| |||| |||||||||||| |||||||||| | ||| ||||  |||||||||||| |||| ||||    
T  5725 tgttagctggtatttttaccaacctcatttaatgcggtcaacattaggtgactttttttcttgcaggaatcgaagccttt 5804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 805 - 854
Target Start/End: Complemental strand, 5388 - 5339
Alignment:
Q  805 tggtattttcaccagcctcatttaatgtggtcaacattggttgattttta 854  Q
    ||||| |||||||||| ||||||||||||||||||||| ||||| |||||    
T  5388 tggtaatttcaccagcatcatttaatgtggtcaacattagttgactttta 5339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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