View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2643R-Insertion-13 (Length: 110)
Name: NF2643R-Insertion-13
Description: NF2643R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2643R-Insertion-13 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 102; Significance: 4e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 4e-51
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 35373164 - 35373265
Alignment:
| Q |
9 |
agcttgcatgtatttatgttttctccatggtcccatgtgcattttgttttccttcaaacaccttttagctgccatacacataatcttgattatgttactt |
108 |
Q |
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| T |
35373164 |
agcttgcatgtatttatgttttctccatggtcccatgtgcattttgttttccttcaaacaccttttagctgccatacacataatcttgattatgttactt |
35373263 |
T |
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| Q |
109 |
aa |
110 |
Q |
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| T |
35373264 |
aa |
35373265 |
T |
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Target: chr4; HSP #2
Raw Score: 98; E-Value: 9e-49
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 35365048 - 35365149
Alignment:
| Q |
9 |
agcttgcatgtatttatgttttctccatggtcccatgtgcattttgttttccttcaaacaccttttagctgccatacacataatcttgattatgttactt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35365048 |
agcttgcatgtatttatgttttctccatggtcccatatgcattttgttttccttcaaacaccttttagctgccatacacataatcttgattatgttactt |
35365147 |
T |
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| Q |
109 |
aa |
110 |
Q |
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|| |
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| T |
35365148 |
aa |
35365149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 28; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 3776269 - 3776214
Alignment:
| Q |
9 |
agcttgcatgtatttatgttttctccatggtcccatgtgcattttgttttccttca |
64 |
Q |
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|||||||||||| |||| || |||||||| |||||||||||||| || ||||||| |
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| T |
3776269 |
agcttgcatgtacctatgcttcctccatggccccatgtgcatttttttatccttca |
3776214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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