View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2643R-Insertion-2 (Length: 630)
Name: NF2643R-Insertion-2
Description: NF2643R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2643R-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 8 - 583
Target Start/End: Original strand, 51231146 - 51231728
Alignment:
| Q |
8 |
actttttggatggatttgcttgcactgccctcttgttaaaggaaaaggaaaataatttgcggacatccataataagcattctacaaagaaagnnnnnnnn |
107 |
Q |
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| T |
51231146 |
actttttggatggatttgcttgcactgccctcttgttaaaggaaaaggaaaataatttgcggacatccataatacgcattctacaaagaaagaaaaaaaa |
51231245 |
T |
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| Q |
108 |
nnnnnntaa-------gagagtggtgtgatatattggtatgatattaggagagatacaaagaaaataaagtgtgtaatgaatgtggactcaacaatttat |
200 |
Q |
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| T |
51231246 |
aaaaaagaaaaaaaaagagagtggtgtgatatattggtatgatattaggagaaatacaaagaaaataaggtgtgtaatgaatgtggactcaacaacttat |
51231345 |
T |
|
| Q |
201 |
acaaattatgaatggggtcaaatgcattttaatgatgagattcttcatatttctctcctatttttcgatcacaattgagaggatctatcttcgaatatta |
300 |
Q |
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| T |
51231346 |
aaaaattatgaatggggtcaaatgcattttaatgatgagattcttcatatttctctcctttttttcgttcacaattgagaggatctatcttcgaatatca |
51231445 |
T |
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| Q |
301 |
ttacccataactaaattttcatgtgcaacttactcaattagtcgtacttttaagttgaaaataactagataattgcaaacttgatannnnnnnaattatt |
400 |
Q |
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||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
51231446 |
ttatccataactaaattttcatgtgcaacttaatcaattagtcgtacttttaagttgaaaataactagataattgcaaacttgatatttttttaattatt |
51231545 |
T |
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| Q |
401 |
tcatgttgaagtggttcatattgtttgattttattaaaaccaaatctatattttttatttgtaaaagattatcttcgatgtaattaattgaccagtgaaa |
500 |
Q |
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| T |
51231546 |
tcatgttgaagtggttcatattgtttgattttattaaaacctaatctatattttttatttgtaaaagattatcttcgatgtaattaattgaccagtgaaa |
51231645 |
T |
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| Q |
501 |
aacattgatcacatgtacggtttatgcagtaaattattataattagtgtgttataatttacttaaaaaatttattttgtgaaa |
583 |
Q |
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| T |
51231646 |
aacattgatcacatgtacggtttatgcagtaaattattataattagtgtgttataatttacttaaaaaatttattttgtgaaa |
51231728 |
T |
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