View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2643R-Insertion-3 (Length: 553)
Name: NF2643R-Insertion-3
Description: NF2643R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2643R-Insertion-3 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 154 - 553
Target Start/End: Original strand, 46337912 - 46338302
Alignment:
| Q |
154 |
caaggatgccctcaccgtgaacataacttaattgatagagacattacatgtaatatgtaagggtcgaagtttgaacgcatattccactggtattcacttg |
253 |
Q |
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| T |
46337912 |
caaggatgccgtcaccgtgaacataacttaattgatagagacatta-------tatgtaagggtcgaagtttgaaggcatattccactagtattcacttg |
46338004 |
T |
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| Q |
254 |
tggagtgaattt-atatatattagactacttaaaaataaacaaaatacacgaacacaccannnnnnnnnnctttccaatggttagttttcttgttctttt |
352 |
Q |
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| T |
46338005 |
tggagtgaattttatatatattagactacttaaaaataaacaaaatacacgaacacaccattttttttc---ttccaatggttagttttcttgttctttt |
46338101 |
T |
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| Q |
353 |
tcctcgtaacatgatttcttgattctttgtagaatatcctccatcttggtgcaagtttctggcttgtcaccattcttctaattgtctttggattcacata |
452 |
Q |
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| T |
46338102 |
tcctcgtaacatgatttcttgattctttgtagaatatcctccatcttggtgcaagtttctggcttgtcaccattcttttaattgtctttggattcacata |
46338201 |
T |
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| Q |
453 |
ttgctttgctcttcttccaattttctttgttggattcacctttcttaaatcttgccaataaagtttgttcttcttgtctttcatttcctctatttgttac |
552 |
Q |
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| T |
46338202 |
ttgctttgttcttcttccaattttctttgttggattcacctttcttaaatcttgccaataaagtttgttcttcttgtctttcatttcctctatttgttac |
46338301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 46337767 - 46337830
Alignment:
| Q |
9 |
atcgaatccaaaggaatcaatgaagaatacattggtctggtttgattcatttgattgacatttt |
72 |
Q |
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| T |
46337767 |
atcgaaaccaaaggaatcaatgaagaatacattggtctggtttgatttatttgattgacatttt |
46337830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 11948308 - 11948272
Alignment:
| Q |
173 |
aacataacttaattgatagagacattacatgtaatat |
209 |
Q |
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| T |
11948308 |
aacataactgaattgatagagacattacatgtaatat |
11948272 |
T |
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