View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2643R-Insertion-4 (Length: 341)

Name: NF2643R-Insertion-4
Description: NF2643R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2643R-Insertion-4
NF2643R-Insertion-4
[»] chr8 (1 HSPs)
chr8 (9-341)||(26477007-26477343)


Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 9 - 341
Target Start/End: Original strand, 26477007 - 26477343
Alignment:
Q  9 gcgcaatgtgtgagtgatctactagtag-----ta--ggaggctatggtgtttaaaacaacaaaaatttataatcttggcaatctatgcttttattattt 101  Q
    |||||||||||||||||||||||||||      ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26477007 gcgcaatgtgtgagtgatctactagtatcctcctactggaggctatggtgtttaaaacaacaaaaatttataatcttggcaatctatgcttttattattt 26477106  T
Q  102 cttcgacagaacgcaatctaaggttttattctttcagttgtttttcatttctatatctttcccatcacgtggatttcttcactcatttcacaattatata 201  Q
    ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26477107 ctttgacagaacgcaatctaagattttattctttcagttgtttttcatttctatatctttcacatcacgtggatttcttcactcatttcacaattatata 26477206  T
Q  202 atcttttccatattattaataaaccgtgcttagaactttcaccataacaactcaaaccacttgannnnnnnnnnnnnnaaaatattgttatacttttctt 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||               |||||||||||||||||||||    
T  26477207 atcttttccatattattaataaaccgtgcttagaactttcaccat---aactcaaaccacttgatttttatttttttttaaatattgttatacttttctt 26477303  T
Q  302 tggcacgaagaaacgaaacggttctttcttatatacacac 341  Q
    ||||| ||||||||||||||||||||||||||||| ||||    
T  26477304 tggcatgaagaaacgaaacggttctttcttatatatacac 26477343  T

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