View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2643R-Insertion-5 (Length: 335)
Name: NF2643R-Insertion-5
Description: NF2643R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2643R-Insertion-5 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 9 - 335
Target Start/End: Complemental strand, 45283359 - 45283033
Alignment:
| Q |
9 |
ccaccaagtgtgttcatgacaacaacattcaagctgttcatgaccaaaccgctgatatgagaaattggttgagtgcggttatctcttacagacaagcttg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45283359 |
ccaccaagtgtgttcatgacaacaacattcaagctgttcatgaccaaatcgctgatatgaggaattggttgagtgcggttatctcttacagacaagcttg |
45283260 |
T |
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| Q |
109 |
tatggaaggatttgacgatgcaaatgatggtgagaagaagatcaaggagcaattccatgttcagagtttggacagcgtacaaaaggttaccgctgttgcc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45283259 |
tatggaaggatttgacgatgcaaatgatggtgagaagaagatcaaggagcaattccatgttcagagtttggacagcgtacaaaaggttaccgctgttgcc |
45283160 |
T |
|
| Q |
209 |
cttgacattgtgactggtttgtccgacatcctccagcaattcaacttgaagtttgatgtcaaacctgcttcccgtcgtcttcttaattctgaggtgactg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45283159 |
cttgacattgtgactggtttgtccgacatcctccagcaattcaacttgaagtttgatgtcaaacctgcttcccgtcgtcttcttaattctgaggtgactg |
45283060 |
T |
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| Q |
309 |
ttgacgatcaaggatacccttcatgga |
335 |
Q |
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||||||||||||||||||||||||||| |
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| T |
45283059 |
ttgacgatcaaggatacccttcatgga |
45283033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 9 - 335
Target Start/End: Complemental strand, 45294747 - 45294421
Alignment:
| Q |
9 |
ccaccaagtgtgttcatgacaacaacattcaagctgttcatgaccaaaccgctgatatgagaaattggttgagtgcggttatctcttacagacaagcttg |
108 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
45294747 |
ccaccaagtgtgttcatgacagcaacattcaagctgttcatgaccaaaccgctgatatgaggaattggttgagtgcagttatctcttacagacaagcttg |
45294648 |
T |
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| Q |
109 |
tatggaaggatttgacgatgcaaatgatggtgagaagaagatcaaggagcaattccatgttcagagtttggacagcgtacaaaaggttaccgctgttgcc |
208 |
Q |
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|||||||||||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45294647 |
tatggaaggatttgacgatgaaaatgacggtgagaagaagatcaaggagcaattagacgttcagagtttggacagcgtacaaaaggttaccgctgttgcc |
45294548 |
T |
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| Q |
209 |
cttgacattgtgactggtttgtccgacatcctccagcaattcaacttgaagtttgatgtcaaacctgcttcccgtcgtcttcttaattctgaggtgactg |
308 |
Q |
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| T |
45294547 |
cttgacattgtgactggtttgtccgacatcctccagcaattcaacttgaagtttgatatcaaacctgcttcccgtcgtcttcttaattctgaggtgactg |
45294448 |
T |
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| Q |
309 |
ttgacgatcaaggatacccttcatgga |
335 |
Q |
| |
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|||| |||||||||||||||||||||| |
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| T |
45294447 |
ttgatgatcaaggatacccttcatgga |
45294421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 9 - 335
Target Start/End: Complemental strand, 45303707 - 45303381
Alignment:
| Q |
9 |
ccaccaagtgtgttcatgacaacaacattcaagctgttcatgaccaaaccgctgatatgagaaattggttgagtgcggttatctcttacagacaagcttg |
108 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
45303707 |
ccaccaagtgtgttcatgacagcaacattcaagctgttcatgaccaaaccgctgatatgaggaattggttgagtgcagttatctcttacagacaagcttg |
45303608 |
T |
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| Q |
109 |
tatggaaggatttgacgatgcaaatgatggtgagaagaagatcaaggagcaattccatgttcagagtttggacagcgtacaaaaggttaccgctgttgcc |
208 |
Q |
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|||||||||||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45303607 |
tatggaaggatttgacgatgaaaatgacggtgagaagaagatcaaggagcaattagacgttcagagtttggacagcgtacaaaaggttaccgctgttgcc |
45303508 |
T |
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| Q |
209 |
cttgacattgtgactggtttgtccgacatcctccagcaattcaacttgaagtttgatgtcaaacctgcttcccgtcgtcttcttaattctgaggtgactg |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45303507 |
cttgacattgtgactggtttgtccgacatcctccagcaattcaacttgaagtttgatatcaaacctgcttcccgtcgtcttcttaattctgaggtgactg |
45303408 |
T |
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| Q |
309 |
ttgacgatcaaggatacccttcatgga |
335 |
Q |
| |
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|||| |||||||||||||||||||||| |
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| T |
45303407 |
ttgatgatcaaggatacccttcatgga |
45303381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 335
Target Start/End: Complemental strand, 45271577 - 45271259
Alignment:
| Q |
17 |
tgtgttcatgacaacaacattcaagctgttcatgaccaaaccgctgatatgagaaattggttgagtgcggttatctcttacagacaagcttgtatggaag |
116 |
Q |
| |
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||||||| ||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||| ||||| ||||||||||| |
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| T |
45271577 |
tgtgttcgtgacaacaacattgaagctgttcatgaccaaactgctgatatgaggaattggttgagtgcagttatctcttacaaacaaggttgtatggaag |
45271478 |
T |
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| Q |
117 |
gatttgacgatgcaaatgatggtgagaagaagatcaaggagcaattccatgttcagagtttggacagcgtacaaaaggttaccgctgttgcccttgacat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || || |||||||||||||| |
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| T |
45271477 |
gatttgacgatgcaaatgatggtgagaagaagatcaaggagcaattccatgttcagagtttgtacagcgtacaaaaggtcacagccgttgcccttgacat |
45271378 |
T |
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| Q |
217 |
tgtgactggtttgtccgacatcctccagcaattcaacttgaagtttgatgtcaaacctgcttcccgtcgtcttcttaattctgaggtgactgttgacgat |
316 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45271377 |
tgtgactggtttgtctgacatcctccagcaattcaacttgaactttgatatcaaacctccttcccgtcgtcttcttaattctgaggtgactgttgacgat |
45271278 |
T |
|
| Q |
317 |
caaggatacccttcatgga |
335 |
Q |
| |
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||||||||||||||||||| |
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| T |
45271277 |
caaggatacccttcatgga |
45271259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 25 - 335
Target Start/End: Complemental strand, 45275102 - 45274792
Alignment:
| Q |
25 |
tgacaacaacattcaagctgttcatgaccaaaccgctgatatgagaaattggttgagtgcggttatctcttacagacaagcttgtatggaaggatttgac |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || || || ||||||||||| |||||||||||||||||| |
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| T |
45275102 |
tgacaacaacattcaagctgttcatgaccaaactgctgatatgaggaattggttgagtgcagtcatatcctacagacaagcctgtatggaaggatttgac |
45275003 |
T |
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| Q |
125 |
gatgcaaatgatggtgagaagaagatcaaggagcaattccatgttcagagtttggacagcgtacaaaaggttaccgctgttgcccttgacattgtgactg |
224 |
Q |
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||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||| |
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| T |
45275002 |
gatgcaaatgatggtgagaagaaaatcaaagagcaattccatgttcagagtttggacagcgtacaaaagatcaccgcggttgcccttgacattgtgactg |
45274903 |
T |
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| Q |
225 |
gtttgtccgacatcctccagcaattcaacttgaagtttgatgtcaaacctgcttcccgtcgtcttcttaattctgaggtgactgttgacgatcaaggata |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45274902 |
gtttgtccgacatcctccagcaattcaacttgaagtttgatatcaaacctctttcccgtcgtcttcttaattctgaggtgactgttgacgatcaaggata |
45274803 |
T |
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| Q |
325 |
cccttcatgga |
335 |
Q |
| |
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||||||||||| |
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| T |
45274802 |
cccttcatgga |
45274792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 38588718 - 38588624
Alignment:
| Q |
29 |
aacaacattcaagctgttcatgaccaaaccgctgatatgagaaattggttgagtgcggttatctcttacagacaagcttgtatggaaggatttga |
123 |
Q |
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|||||||||||||| ||||||| ||||| ||||| | || |||||||||||||| |||||||| ||| |||| | || ||||| |||||||| |
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| T |
38588718 |
aacaacattcaagccattcatgatcaaacacctgattttaggaattggttgagtgctgttatctcataccaacaatcatgcatggacggatttga |
38588624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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