View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2643R-Insertion-9 (Length: 120)
Name: NF2643R-Insertion-9
Description: NF2643R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2643R-Insertion-9 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 84; Significance: 2e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 2e-40
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 35802720 - 35802831
Alignment:
| Q |
9 |
attttctgctacgatagctcctgctcccattgccatgtagtatcctgcacttattgccacatcagacattgaagtaatgacggggattttggaagcaaga |
108 |
Q |
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| T |
35802720 |
attttctgctacgatagctcctgctcccattgccatgtagtatcctgcacttgttgccgcatcagacattgaagcaatgacgggtttttttgaagcaaga |
35802819 |
T |
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| Q |
109 |
gatccgattgcc |
120 |
Q |
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|||| ||||||| |
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| T |
35802820 |
gatctgattgcc |
35802831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 7e-22
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 10521105 - 10521033
Alignment:
| Q |
9 |
attttctgctacgatagctcctgctcccattgccatgtagtatcctgcacttattgccacatcagacattgaa |
81 |
Q |
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| T |
10521105 |
attttctgctacgatatctcctgctcccgttgccatgtagtatcctgcacttgctgctacatcagacattgaa |
10521033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 5e-23; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 45878693 - 45878771
Alignment:
| Q |
11 |
tttctgctacgatagctcctgctcccattgccatgtagtatcctgcacttattgccacatcagacattgaagtaatgac |
89 |
Q |
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| T |
45878693 |
tttctgcaacaatagctcctgctcccattgccatgtagtatcctccacttgctgccacatcagacattgaagcaatgac |
45878771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 55705679 - 55705578
Alignment:
| Q |
9 |
attttctgctacgatagctcctgctcccattgccatgtagtatcctgcacttattgccacatcagacattgaagtaatgacggggattttggaagcaaga |
108 |
Q |
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| T |
55705679 |
attttctgctactattattccagctcccattgccatgtactatcctgcactggctgccacgtcatacattgaagcaatgacaggtttttgggcagcaaga |
55705580 |
T |
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| Q |
109 |
ga |
110 |
Q |
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|| |
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| T |
55705579 |
ga |
55705578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 56208892 - 56208972
Alignment:
| Q |
9 |
attttctgctacgatagctcctgctcccattgccatgtagtatcctgcacttattgccacatcagacattgaagtaatgac |
89 |
Q |
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| T |
56208892 |
attttctgcaacaataactcctgctcccattgccatgtggtatcctccacttgctgtcatatgagacatcgaagcaatgac |
56208972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 54304116 - 54304073
Alignment:
| Q |
45 |
gtagtatcctgcacttattgccacatcagacattgaagtaatga |
88 |
Q |
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| T |
54304116 |
gtagtatcctgcacttgttgccacatcagatattgaagcaatga |
54304073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 45860198 - 45860254
Alignment:
| Q |
32 |
ctcccattgccatgtagtatcctgcacttattgccacatcagacattgaagtaatga |
88 |
Q |
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| T |
45860198 |
ctcccatcgccatatagtatcctccactagctgccacatcagacattgaagcaatga |
45860254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 47293268 - 47293221
Alignment:
| Q |
9 |
attttctgctacgatagctcctgctcccattgccatgtagtatcctgc |
56 |
Q |
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| T |
47293268 |
attttctgcaacaataactcctgcgcccattgccacgtagtatcctgc |
47293221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 10 - 110
Target Start/End: Original strand, 7972437 - 7972537
Alignment:
| Q |
10 |
ttttctgctacgatagctcctgctcccattgccatgtagtatcctgcacttattgccacatcagacattgaagtaatgacggggattttggaagcaagag |
109 |
Q |
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| T |
7972437 |
ttttctgcaacaataactcctgcgcccattgccatgtagtatcctgcgctcattgccagatcagacatcaaagcaataactggttttttggaagcaagag |
7972536 |
T |
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| Q |
110 |
a |
110 |
Q |
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| T |
7972537 |
a |
7972537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 24354067 - 24354011
Alignment:
| Q |
33 |
tcccattgccatgtagtatcctgcacttattgccacatcagacattgaagtaatgac |
89 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||| ||| |||| |||||| |
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| T |
24354067 |
tcccattgccatgtagtatcctccacttgctgccacatcagccatcgaagcaatgac |
24354011 |
T |
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