View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2643_high_11 (Length: 280)
Name: NF2643_high_11
Description: NF2643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2643_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 264
Target Start/End: Complemental strand, 47564722 - 47564475
Alignment:
| Q |
17 |
aacccaagttggaaatatatcatcatgataatgttgttaaaaatgcatcaagcaagattgaaagctttggattctctttgaatatgttgaagaggccttc |
116 |
Q |
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| T |
47564722 |
aacccaagttggaaatatatcatcatgataatgatgttaaaaatgcatcaagcaagattgaaagctttggattctctttgaatatcttgaagaggccttc |
47564623 |
T |
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| Q |
117 |
tttctatgtacctgctgttgtgatatttattttgttgttgttgactgtttttggaagatcatttgcaacgctttgtacatgtattgtgtggtatatagtc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
47564622 |
tttctatgtacctgctgttgtgatatttattttgttgttgttgactgtttttggaagatcatttgcaacgctttgtacatgtattgtgtggtatatggtc |
47564523 |
T |
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| Q |
217 |
cctattttgaaagatagttcgaaagaaaagaaattgatcaagaaaaag |
264 |
Q |
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||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
47564522 |
cctgttttgaaagatagttcgaaagaaaagaatatgatcaagaaaaag |
47564475 |
T |
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