View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2643_high_12 (Length: 254)
Name: NF2643_high_12
Description: NF2643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2643_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 46338312 - 46338074
Alignment:
| Q |
10 |
gtgagatgaaggtaacaaatagaggaaatgaaagacaagaagaacaaactttattggcaagatttaagaaaggtgaatccaacaaagaaaattggaagaa |
109 |
Q |
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| T |
46338312 |
gtgagatgaaggtaacaaatagaggaaatgaaagacaagaagaacaaactttattggcaagatttaagaaaggtgaatccaacaaagaaaattggaagaa |
46338213 |
T |
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| Q |
110 |
gagcaaagcaatatgtgaatccaaagacaattagaagaatggtgacaagccagaaacttgcaccaagatggaggatattctacaaagaatcaagaaatca |
209 |
Q |
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| T |
46338212 |
gaacaaagcaatatgtgaatccaaagacaattaaaagaatggtgacaagccagaaacttgcaccaagatggaggatattctacaaagaatcaagaaatca |
46338113 |
T |
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| Q |
210 |
tgttacgaggaaaaagaacaagaaaactaaccattggaa |
248 |
Q |
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| T |
46338112 |
tgttacgaggaaaaagaacaagaaaactaaccattggaa |
46338074 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 31529475 - 31529430
Alignment:
| Q |
11 |
tgagatgaaggtaacaaatagaggaaatgaaagacaagaagaacaa |
56 |
Q |
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| T |
31529475 |
tgagatgaagataactaaaaggggaaatgaaagacaagaagaacaa |
31529430 |
T |
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