View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2643_high_4 (Length: 363)
Name: NF2643_high_4
Description: NF2643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2643_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 10 - 348
Target Start/End: Complemental strand, 26477349 - 26477007
Alignment:
| Q |
10 |
gatgaagtgtgtatataagaaagaaccgtttcgtttcttcgtgccaaagaaaagtataacaatattttnnnnnnnnnnnnnntcaagtggtttgagttgt |
109 |
Q |
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| T |
26477349 |
gatgaagtgtatatataagaaagaaccgtttcgtttcttcatgccaaagaaaagtataacaatatttaaaaaaaaataaaaatcaagtggtttgagtt-- |
26477252 |
T |
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| Q |
110 |
tatggtgaaagttctaagcacggtttattaataatatggaaaagattatataattgtgaaatgagtgaagaaatccacgtgatgggaaagatatagaaat |
209 |
Q |
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| T |
26477251 |
-atggtgaaagttctaagcacggtttattaataatatggaaaagattatataattgtgaaatgagtgaagaaatccacgtgatgtgaaagatatagaaat |
26477153 |
T |
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| Q |
210 |
gaaaaacaactgaaagaataaaatcttagattgcgttctgtcgaagaaataataaaagcatagattgccaagattataaatttttgttgttttaaacacc |
309 |
Q |
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| T |
26477152 |
gaaaaacaactgaaagaataaaatcttagattgcgttctgtcaaagaaataataaaagcatagattgccaagattataaatttttgttgttttaaacacc |
26477053 |
T |
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| Q |
310 |
atagcctcc--ta-----ctactagtagatcactcacacattgcgc |
348 |
Q |
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||||||||| || ||||||||||||||||||||||||||| |
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| T |
26477052 |
atagcctccagtaggaggatactagtagatcactcacacattgcgc |
26477007 |
T |
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