View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2643_high_6 (Length: 354)
Name: NF2643_high_6
Description: NF2643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2643_high_6 |
 | |
|
| [»] scaffold0008 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0008 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 52715 - 52394
Alignment:
| Q |
18 |
tagtgttcataaattattacttgaatactgcatgtgttctttagggtttagggtttatttcaattaccttgactaaannnnnnn-ctttatattaattat |
116 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
52715 |
tagtgttcataaattattactt-agtactgcatgggttctttagggtttagggtttatttcaattaccttgaccaaggtttttttctttatattaattat |
52617 |
T |
|
| Q |
117 |
tttcagtgtttgattgattgaagagaattaagcatctaaggtagccatggctgaaattgagcctccaccacttcttcaggtaatatataataaactgcta |
216 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
52616 |
tttcagtgtttgattaattgaagagaactaagcatctaaggtagccatggctgaaattgagcctccaccacgtcttcaggtaatatataataaactgcta |
52517 |
T |
|
| Q |
217 |
attagtaatttaatcattatttaatactgtagctaaacatgaattattgcatcatttaaattttttggcattgacagggaaaatttgctgcaatgttggt |
316 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
52516 |
attagtaatttaattattatttaatact---gctaaacatgaattatttcatcatttaaatttttgggcattgacagggaaaatttgctgcaatgttggt |
52420 |
T |
|
| Q |
317 |
ttgctggattcttggcaatggggttc |
342 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
52419 |
ttgctggattcttggcaatggggttc |
52394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 52776 - 52735
Alignment:
| Q |
35 |
tacttgaatactgcatgtgttctttagggtttagggtttatt |
76 |
Q |
| |
|
||||||| |||| |||| |||||||||||||||||||||||| |
|
|
| T |
52776 |
tacttgagtactacatgggttctttagggtttagggtttatt |
52735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 190 - 342
Target Start/End: Original strand, 31523032 - 31523184
Alignment:
| Q |
190 |
cttcaggtaatatataataaactgctaattagtaatttaatcattatttaatactgtagctaaacatgaattattgcatcatttaaattttttggcattg |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
31523032 |
cttcaggtaatatataataaactgctaattagtaatttaattattatttaatactttatctaaacatgaatgatttcatcatttaaattttttggcattg |
31523131 |
T |
|
| Q |
290 |
acagggaaaatttgctgcaatgttggtttgctggattcttggcaatggggttc |
342 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31523132 |
gcagggaaaatttgctgcaatggtggtttgctggattcttggcaatggggttc |
31523184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 206
Target Start/End: Original strand, 21088465 - 21088545
Alignment:
| Q |
126 |
ttgattgattgaagagaattaagcatctaaggtagccatggctgaaattgagcctccaccacttcttcaggtaatatataa |
206 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| | |||| ||||||||| |||| ||||||||||||| |
|
|
| T |
21088465 |
ttgattgattaaagagaattaagcatctaaggtagccatggtcatgagtgagactccaccacgtcttgaggtaatatataa |
21088545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University