View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2643_high_8 (Length: 334)
Name: NF2643_high_8
Description: NF2643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2643_high_8 |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: scaffold0008 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 313
Target Start/End: Complemental strand, 52263 - 51968
Alignment:
| Q |
18 |
tcctattttttgttttggaaacttgggtattcagccgtagaaggttaatataaagactaatcggatagggtttcacagaatacaatatatagcaccgaag |
117 |
Q |
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| T |
52263 |
tcctattttttgttttggaaactcgggtattcagccgtagaaggttaatataaggactaatcggatagggtttcacagaatacaatacatagcaccgaag |
52164 |
T |
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| Q |
118 |
tcaaggaattggcgtataaagtaacccttaagtgtccatcacaaattaagaaattttctggaaattctcattattgtattgtttaccaacattctagatt |
217 |
Q |
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| T |
52163 |
tcaaggaattggcttataaagtaacccttaagtgtccatcacaaattaagaaattttctggaaattctcaatattgtattgtttaccaacattttagatt |
52064 |
T |
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| Q |
218 |
gttatgtggataatcatagagttaaaaacctagttctctctatttcaattttcggtgtttcaagttttaatatccaattttttgttcatttcctct |
313 |
Q |
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| T |
52063 |
gttatgtggataatcatagagttaaaaacctagttctctctggttcaattttcagtgtttcaagttttaatatccaattttttgttcatttcctct |
51968 |
T |
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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 140 - 221
Target Start/End: Original strand, 31523402 - 31523483
Alignment:
| Q |
140 |
aacccttaagtgtccatcacaaattaagaaattttctggaaattctcattattgtattgtttaccaacattctagattgtta |
221 |
Q |
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| T |
31523402 |
aaccctaaagtgcctatcacaaattcagaaattttctggaaaatctcaagattgtatagttaaccaacattctagattgtta |
31523483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 31523311 - 31523390
Alignment:
| Q |
23 |
ttttttgttttggaaacttgggtattcagccgtagaagg-ttaatataaagactaatcggatagggtttcacagaatacaa |
102 |
Q |
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| T |
31523311 |
ttttttgttttggaaac-tcggtattcagccctagaaggattaatccaaggactaatcagatattgtttcacataatacaa |
31523390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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